G19654


Basic Information

Item Value
gene id G19654
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 957012 ~ 958098 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU23437
AGTGTAGAGTAGAGAATAGAGATGAGTGTAGAGTAGAGAATAGAGTTgagtgtagagtatagaatagaggtgagtgtagagtatagaatAGAGTTGAGTGTAGAGTAGAGAATAGAggtgagtgtagagtatagaatAGAGTTGAGTGTAGAGTAGAGAATAGAGGTGAGTGTAGAGTAGAGAATAGAGGTGAGTGTAGAGTAGAGAATAGAggtgagtgtagagtatagaatAGAGTTGAGTGTAGAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23437 True 252 lncRNA 0.38 2 957012 958098

Neighbor

gene id symbol gene type direction distance location
eif4bb eif4bb,LOC108272209,LOC108441049,LOC107733597 coding upstream 26244 917137 ~ 930768 (+)
LOC113545883 LOC108272230,LOC108272229 coding upstream 48192 906382 ~ 908820 (+)
LOC113545878 LOC108272230,LOC108272229 coding upstream 54669 899681 ~ 902343 (+)
LOC113545879 LOC108272226 coding upstream 61320 888653 ~ 895692 (+)
LOC113545882 NA coding upstream 85854 865023 ~ 871158 (+)
hdac7b LOC108271830 coding downstream 51784 1009882 ~ 1028176 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151 coding downstream 337445 1295543 ~ 1341164 (+)
nipa1 nipa1 coding downstream 721839 1679937 ~ 1686316 (+)
nipa2 nipa2 coding downstream 729458 1687556 ~ 1694753 (+)
chst7 chst7,LOC107582727 coding downstream 786061 1744159 ~ 1754224 (+)
G19645 NA non-coding upstream 42332 914474 ~ 914680 (+)
G19444 NA non-coding upstream 109093 847280 ~ 847919 (+)
G19418 NA non-coding upstream 186807 759373 ~ 770205 (+)
G19317 NA non-coding upstream 415448 451636 ~ 541564 (+)
G19342 NA non-coding upstream 481011 474182 ~ 476001 (+)
G19648 NA non-coding downstream 70745 1028843 ~ 1079801 (+)
G19670 NA non-coding downstream 81502 1039600 ~ 1041411 (+)
G19693 NA non-coding downstream 181780 1139878 ~ 1142132 (+)
G19996 herc2,LOC105895139,LOC106521848 non-coding downstream 658669 1616767 ~ 1617128 (+)
G20004 herc2 non-coding downstream 668526 1626624 ~ 1627077 (+)
G19395 LOC108272241 other upstream 344286 609199 ~ 612726 (+)
LOC113545899 LOC108272223 other upstream 398543 554222 ~ 558469 (+)
LOC113545897 NA other upstream 683084 260984 ~ 273928 (+)
itgb7 LOC108271744 other upstream 726106 208913 ~ 230906 (+)
vdrb vdrb,LOC108272216,LOC107585146,LOC107673565,LOC108441087,LOC107667372,LOC107582718,LOC107733590,LOC107711077 other downstream 11859 969957 ~ 1002458 (+)
cnga3a cnga3a,LOC108271559,LOC107733584,LOC108441138 other downstream 124338 1082436 ~ 1095954 (+)
LOC113545932 gabrg3 other downstream 393655 1351753 ~ 1488779 (+)
opa1 opa1,LOC107585173,LOC107722677,LOC107582739,LOC107711112,LOC107673572 other downstream 1428601 2386699 ~ 2452689 (+)
vhl vhl other downstream 1776014 2734112 ~ 2737993 (+)

Expression


Co-expression Network