G19670


Basic Information

Item Value
gene id G19670
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 1039600 ~ 1041411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU23465
cacacacacacacacacacacccccaacacacgcacacacacacacacacacccccaacacacgcacacatacacacacccaacacacgcacacacacccaacacacgcacacacacccaacacacgcgcacacacccccaacacacgcgcacacaccccccaacacacacacacacacgcacgcacaaacacgcacccccaacacacacacacacacacacacacacacacacccaacaaacccaacacacacacacacacacacacacccacacaaccaaaaaaaaacccaacaaacacacacacgcacacacccacccacccacgtCTGTGTGAAGTGAAAAAGGTGCAGTTTGTTGGAAATGTGTAAGTGAAAGTGAAGAGGACGGCTGAGGAAGGAACTTGGGTTCTCTGATTGCAGAACTGAAAGCATGTGTCGAGTTCTCCGAGTCTCAGGATTCACTCAGAGCTGCTGAGTCAGGAATCAAACGGCGAGACGTGACTCAGGAGTTAAAGTCGATTCGCTGAATCAGCGTCTCCGTGACGATGCCTGAGAGAAGCGTCAGGTCTCTGTACTGGATCCAGTCCTGTTCTCTGATCGCCCACACGGTACCGTCcggctacaacacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacaaacacacaaacacgtgtCTACAAAATGATTGCATCATAAATCTTCTATTCGTTATTGAGCACGAACACTAACAGGGTTTCCTGTTACAGTTAGGGTTTGAGTTTAAAATCCGCTCTTGTCaccttcaaacctactgaaagctcTGTTTTATGTACCaaccttctggattttctagattaataaacacttttgaatgtaaggacAGagttcatgacaacaatcacaacgaCAGCATAAAGTTTAACGAGAGGAAGTGTGTTGAATGTTGCTGTGCAGGAAATTGCTAATCATTTTACAGAGTTAGACTTGGAAgcctgatggacagggatgaCTTGGCTCTGACGTGCCGTCTAGCGAGCGTCACTTTTACATCTTCTGGATGTACGTAAGATACACAGCGAGTGTGGGAATAATAACGCCACTCGTGTTACCGCTGCGTCTGCGTGCACCAAGTATAAACCAGGTTCCtttaacaacacaacacttctcACTTGACTGGTGAgccagtgcaaggaatattccttcgGTCTTTAGTCGCTTACATTAAACATACACATGATACGaacacaataaaatattcaaatgttacagtagccCTAAATGAATAATGTGGAATTTAAAGGCTTGGGGTCATGGAAAATTCATAATGCTCATTTGGGGTCGTTTGTCTAGAAACTGGAAACTCTTGCAACAGACCATAATTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23465 True 1424 lncRNA 0.43 2 1039600 1041411

Neighbor

gene id symbol gene type direction distance location
hdac7b LOC108271830 coding upstream 11424 1009882 ~ 1028176 (+)
tns2b LOC108272206,LOC105895952 coding upstream 80298 936227 ~ 959302 (+)
eif4bb eif4bb,LOC108272209,LOC108441049,LOC107733597 coding upstream 108832 917137 ~ 930768 (+)
LOC113545883 LOC108272230,LOC108272229 coding upstream 130780 906382 ~ 908820 (+)
LOC113545878 LOC108272230,LOC108272229 coding upstream 137257 899681 ~ 902343 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151 coding downstream 254132 1295543 ~ 1341164 (+)
nipa1 nipa1 coding downstream 638526 1679937 ~ 1686316 (+)
nipa2 nipa2 coding downstream 646145 1687556 ~ 1694753 (+)
chst7 chst7,LOC107582727 coding downstream 702748 1744159 ~ 1754224 (+)
rp2 rp2,LOC107753404,LOC107685300,LOC107711097 coding downstream 788602 1830013 ~ 1841202 (+)
G19655 NA non-coding upstream 81236 957501 ~ 958364 (+)
G19654 NA non-coding upstream 81502 957012 ~ 958098 (+)
G19645 NA non-coding upstream 124920 914474 ~ 914680 (+)
G19444 NA non-coding upstream 191681 847280 ~ 847919 (+)
G19418 NA non-coding upstream 269395 759373 ~ 770205 (+)
G19693 NA non-coding downstream 98467 1139878 ~ 1142132 (+)
G19996 herc2,LOC105895139,LOC106521848 non-coding downstream 575356 1616767 ~ 1617128 (+)
G20004 herc2 non-coding downstream 585213 1626624 ~ 1627077 (+)
G20021 NA non-coding downstream 605675 1647086 ~ 1695540 (+)
G20057 NA non-coding downstream 661022 1702433 ~ 1702871 (+)
vdrb vdrb,LOC108272216,LOC107585146,LOC107673565,LOC108441087,LOC107667372,LOC107582718,LOC107733590,LOC107711077 other upstream 37142 969957 ~ 1002458 (+)
G19395 LOC108272241 other upstream 426874 609199 ~ 612726 (+)
LOC113545899 LOC108272223 other upstream 481131 554222 ~ 558469 (+)
LOC113545897 NA other upstream 765672 260984 ~ 273928 (+)
itgb7 LOC108271744 other upstream 808694 208913 ~ 230906 (+)
cnga3a cnga3a,LOC108271559,LOC107733584,LOC108441138 other downstream 41025 1082436 ~ 1095954 (+)
LOC113545932 gabrg3 other downstream 310342 1351753 ~ 1488779 (+)
opa1 opa1,LOC107585173,LOC107722677,LOC107582739,LOC107711112,LOC107673572 other downstream 1345288 2386699 ~ 2452689 (+)
vhl vhl other downstream 1692701 2734112 ~ 2737993 (+)
col7a1 col7a1 other downstream 1790742 2832153 ~ 2946856 (+)

Expression


Co-expression Network