rp2 (rp2,LOC107753404,LOC107685300,LOC107711097)


Basic Information

Item Value
gene id rp2
gene name rp2,LOC107753404,LOC107685300,LOC107711097
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 1830013 ~ 1841202 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300826.1
GTGGTTGATGATTGGCTGGCTGTGTGAGGGGTAAGAAACGGGAAGCTCTCAGGTTTACGGGCGTTAGTGATTTGGTAGCTTGACGCGGTTGTGAGGAAGACCTGGTGTTTAGTGGGGTATTTTGGAATTATTTTGGTGATATTTTGAAACATGGGGTGCTTTTTCTCGAAAAAATCAAGGAGAAAATCTCCGGATAAAGACCCTGCGCTGCCTTCCGAGGTCTCTACCAACAACACCAACGGTAACCAAGAGGAACCCAAACAGTACAGCTGGGACAAACGGgaaaagGTTGATCCCAAAGACTTCATGCTGACCGGTTTGAAGGACACCACCGTGGGCCGTCTGCCCGGAAAACTGAACGGTCAGCAGTTCACCATCCAAGAATGCGAGAACTGCAACATCTACGTGCTCGACCACTCGGCTACGGTCACCATCGACGACTGCGTCAACTGCCGCATTGTGCTCGGCCCCGTCAAAGGCAGCGTCTTCTTCCGGGATTGCAGAGACGTTAAGTGCGTGGTGGCGTGCCAACAATTCCGCACGAGGGACTGCAAGAAAATGGACGTGTTTCTGTGCTGCGCCACGCAGCCCATCATCGAGTCTTCTACAGGCATGAAGTTCGGCTGTTTTCAGTACTATTACCCCGAGCTGGCCTTCCACTTCAAGGACGCAGGGCTGAGCATCTTCAACAACAACTGGAGCAACGTGCACGACTTCACGCCCGTTTCAGGAGAGAACAACTGGAGTCTAATGGCCGAGGACGCCGCCGTGTTGGAGCACGTCCCTCTTCCCGATCCCGAGTCGGAGTTTAAGGGCGTACGCATATCCGCTGATAAGAACCGCAGCATCGTCCCGTTGACCAAAGGAGGGAGGAGAAAGGAGAGCGAGGAGTCCTGCCTGTTCGTCTTCTTCGCTGGAGATTACACCACGGCCAACGCTCGGAAGCTCATCGATGAGGCGACTGTCAAGGGCTTCGTCCTCATCCAGACCAAGGAGGTGTCCATGCGTCCTGAAGACGTGAACAGGGTTTTCCAGAACAGCGCAGAGGAGCTCACCGAGTGGACGGCCAAAGgtcctGTCGTGGCTCTCGAGCTGAACGGAGACGGCGTGGTGGAAGCCTGCAGGATCATCGCGAATGAGGTGTTCAAAGGAACAAAGgTATTTGTTTCTGAGAATAAAAATTCAGCCTCGCAGGACATCGACAACTTTTTCAACTTTGCTGACATGCAGTTGGGACTGTGACTGGAACAAACGCAAACcgagttttttttaacagacacATTTTTCTATGTTCAATGTTGAAAACTAGAAGTGAGCTGGAGTTCATGATCTACTGGTGAAAGTGATGAAGCAGGCGCAGAGTCCACTGGCGTCACTCTCACCTTTTAAAGGTTGGTTTAAACCCGTTTGGACCCCTAGGGGTCAAGAGGtcacagtggtggaaatcacaaaccaccattatcaaagttattatattaatcGTTGCGTTCTCGTAGGTATTAGTCCCGAATGAAAtgcaaacctcaataactcaggACGCTATTGGACGATTTGAGGAGTGAATCAGAGCgaaattgattcatttgattcatttcacACTGCATATAGTGAAACGAATCATTATGTGGAGTGTGAAGTGAATGAAACGAATCAAAAGAAtcagtttcactctgtgtattcagtgtgattcagtgtgcGTATAGAGCTTCGAATGTCCTCGTAAATCTTTCATTCACTGGCGATAAATACAGCGATGGACAAAAAGTGAAACAGAACTTTATCAAGTGCacagagaaatcacaaaaatcaccccaacatggagaacacagccAACACGAAAGTAATGACTAGATAAtcatataaataactagtttaaaacattttatgtgtcGCATCCAGagtttatttcctctttttgtcCATAGCGTGAAGCACACAACgcgtttgattcacttcctgcaggtgaGTCGATTCACTTACAGGTGAGtcgaatcgctttctcactgGAGTTCACTCAGAAACAACTCTAGACCTCCTCGGAGACCATCACGCTCAGACGATGCTCGGATCTGAGTGTGTTTCCGTGATCTtccctgaataaaaaaaaacgcacAGATGATGaaactttttataaaaatgtgttctg

Function

symbol description
rp2 Predicted to enable GTPase activator activity. Acts upstream of or within animal organ development; photoreceptor cell maintenance; and photoreceptor cell outer segment organization. Predicted to be located in cell projection and plasma membrane. Predicted to be active in cilium and periciliary membrane compartment. Is expressed in several structures, including fertilized egg; liver and biliary system; pleuroperitoneal region; sensory system; and trunk. Used to study retinitis pigmentosa 2. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 2. Orthologous to human RP2 (RP2 activator of ARL3 GTPase).

NR:

description
protein XRP2-like

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0010842 retina layer formation biological_process
GO:0001947 heart looping biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K18272 RP2; protein XRP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300826.1 True 2146 mRNA 0.48 5 1830013 1841202

Neighbor

gene id symbol gene type direction distance location
chst7 chst7,LOC107582727 coding upstream 75789 1744159 ~ 1754224 (+)
nipa2 nipa2 coding upstream 135260 1687556 ~ 1694753 (+)
nipa1 nipa1 coding upstream 143697 1679937 ~ 1686316 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151 coding upstream 488849 1295543 ~ 1341164 (+)
hdac7b LOC108271830 coding upstream 801837 1009882 ~ 1028176 (+)
jade3 jade3,LOC107585190 coding downstream 2877 1844079 ~ 1862140 (+)
plcxd1 plcxd1,LOC108271842,LOC103035541,LOC107673474,LOC107711026,LOC107585164,LOC108441321 coding downstream 27084 1868286 ~ 1877817 (+)
si:dkey-66a8.7 LOC108271843 coding downstream 36720 1877922 ~ 1884190 (+)
nit2 nit2,LOC107582734,LOC107685305,LOC107673472 coding downstream 52544 1893746 ~ 1904309 (+)
LOC113545943 cth coding downstream 67280 1908482 ~ 1925490 (+)
G20116 slc9a7,LOC107585158,LOC107711095,LOC107673530 non-coding upstream 21820 1806861 ~ 1808193 (+)
G20115 NA non-coding upstream 24255 1803136 ~ 1805758 (+)
G20113 NA non-coding upstream 27556 1802226 ~ 1802457 (+)
G20112 NA non-coding upstream 28157 1801642 ~ 1801856 (+)
G20057 NA non-coding upstream 127142 1702433 ~ 1702871 (+)
G20208 ptger3,LOC107582843 non-coding downstream 129077 1970279 ~ 1974521 (+)
G20372 chd1l non-coding downstream 488205 2329407 ~ 2330884 (+)
G20401 NA non-coding downstream 525407 2366609 ~ 2368218 (+)
G20802 NA non-coding downstream 1107408 2948610 ~ 2948846 (+)
G20807 NA non-coding downstream 1110475 2951677 ~ 2951878 (+)
LOC113545932 gabrg3 other upstream 341234 1351753 ~ 1488779 (+)
cnga3a cnga3a,LOC108271559,LOC107733584,LOC108441138 other upstream 734059 1082436 ~ 1095954 (+)
vdrb vdrb,LOC108272216,LOC107585146,LOC107673565,LOC108441087,LOC107667372,LOC107582718,LOC107733590,LOC107711077 other upstream 827555 969957 ~ 1002458 (+)
G19395 LOC108272241 other upstream 1217287 609199 ~ 612726 (+)
LOC113545899 LOC108272223 other upstream 1271544 554222 ~ 558469 (+)
opa1 opa1,LOC107585173,LOC107722677,LOC107582739,LOC107711112,LOC107673572 other downstream 545497 2386699 ~ 2452689 (+)
vhl vhl other downstream 892910 2734112 ~ 2737993 (+)
col7a1 col7a1 other downstream 990951 2832153 ~ 2946856 (+)
trnaf-gaa_10 NA other downstream 1145016 2986218 ~ 2986433 (+)
trnaf-gaa_11 NA other downstream 1147601 2988803 ~ 2988875 (+)

Expression


Co-expression Network