G20113


Basic Information

Item Value
gene id G20113
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 1802226 ~ 1802457 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU23961
CAACTAACTAAGCTAGCTATAATGTTAAGCTGACTATTATAATATGGGAACTAGGTGCTATGAAGCTAACAGGCGCCAGGCTAACTGCTATACTGCGTTATTAAAACCAAAAGCTAGCAAGACCTTTGTGTGATTCtaagctaacaagctagctagcattagcctAACTACTATTTCGTTCAATTAAACCCAGTAGCTTAATTTGTTAAGAAGCTAGCTATCTTAACGTaag

Function

NR:

description
PREDICTED: receptor activity-modifying protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23961 True 232 lncRNA 0.37 1 1802226 1802457

Neighbor

gene id symbol gene type direction distance location
chst7 chst7,LOC107582727 coding upstream 48002 1744159 ~ 1754224 (+)
nipa2 nipa2 coding upstream 107473 1687556 ~ 1694753 (+)
nipa1 nipa1 coding upstream 115910 1679937 ~ 1686316 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151 coding upstream 461062 1295543 ~ 1341164 (+)
hdac7b LOC108271830 coding upstream 774050 1009882 ~ 1028176 (+)
rp2 rp2,LOC107753404,LOC107685300,LOC107711097 coding downstream 27556 1830013 ~ 1841202 (+)
jade3 jade3,LOC107585190 coding downstream 41622 1844079 ~ 1862140 (+)
plcxd1 plcxd1,LOC108271842,LOC103035541,LOC107673474,LOC107711026,LOC107585164,LOC108441321 coding downstream 65829 1868286 ~ 1877817 (+)
si:dkey-66a8.7 LOC108271843 coding downstream 75465 1877922 ~ 1884190 (+)
nit2 nit2,LOC107582734,LOC107685305,LOC107673472 coding downstream 91289 1893746 ~ 1904309 (+)
G20112 NA non-coding upstream 370 1801642 ~ 1801856 (+)
G20057 NA non-coding upstream 99355 1702433 ~ 1702871 (+)
G20021 NA non-coding upstream 106686 1647086 ~ 1695540 (+)
G20004 herc2 non-coding upstream 175149 1626624 ~ 1627077 (+)
G19996 herc2,LOC105895139,LOC106521848 non-coding upstream 185098 1616767 ~ 1617128 (+)
G20115 NA non-coding downstream 679 1803136 ~ 1805758 (+)
G20116 slc9a7,LOC107585158,LOC107711095,LOC107673530 non-coding downstream 4404 1806861 ~ 1808193 (+)
G20208 ptger3,LOC107582843 non-coding downstream 167822 1970279 ~ 1974521 (+)
G20372 chd1l non-coding downstream 526950 2329407 ~ 2330884 (+)
G20401 NA non-coding downstream 564152 2366609 ~ 2368218 (+)
LOC113545932 gabrg3 other upstream 313447 1351753 ~ 1488779 (+)
cnga3a cnga3a,LOC108271559,LOC107733584,LOC108441138 other upstream 706272 1082436 ~ 1095954 (+)
vdrb vdrb,LOC108272216,LOC107585146,LOC107673565,LOC108441087,LOC107667372,LOC107582718,LOC107733590,LOC107711077 other upstream 799768 969957 ~ 1002458 (+)
G19395 LOC108272241 other upstream 1189500 609199 ~ 612726 (+)
LOC113545899 LOC108272223 other upstream 1243757 554222 ~ 558469 (+)
opa1 opa1,LOC107585173,LOC107722677,LOC107582739,LOC107711112,LOC107673572 other downstream 584242 2386699 ~ 2452689 (+)
vhl vhl other downstream 931655 2734112 ~ 2737993 (+)
col7a1 col7a1 other downstream 1029696 2832153 ~ 2946856 (+)
trnaf-gaa_10 NA other downstream 1183761 2986218 ~ 2986433 (+)
trnaf-gaa_11 NA other downstream 1186346 2988803 ~ 2988875 (+)

Expression


Co-expression Network