G20401


Basic Information

Item Value
gene id G20401
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 2366609 ~ 2368218 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU24286
GGCAGCATTTTACACAACGCTTTCTCATAAATACAGCCATCACAAAGCTATCAGTGTATagtaaaaaataacaaaacttaACTAAgttaacaagataaaaaaaagagaaaattacacacatcattttGTTAAGGCGTATCCATTATAATAtctctgttaaataataaaaagctgttTTAAATCCTTAATGAAATATGCAGTATCTTTACAAAATATACTGTTCATGTACATCAATAAATAGTTGATGCAACGTAATTCAAGGTTCTTCCCAGATTGCACACTGTTTCTGCTTAGAAAGTCCAAAAAATTTCAACATAATGTCACAAAACATTAAAGCCCTGGCATTTAACTTCCTACTTGAAATGATATCCAACATTTCTACTAAGTAGAGTTgtccaaaagcaaAATGAGTGCACCAGAGTGAGTCCTGTCATCTCtctttaaaggaatactccgacattttttaaaatcataaactCTGTAATTTCAATACGTTTCCCTGGAGTAAGTTACTCCAAACTCATTCTTAATGGAAGTTTAAGGGCAGCTGTTGAACTGTTAAAACTGTTACAGTAAATTTTCATGAATTTTGGTGAAAATTCACGAATTTTCCCTCTCAGCGTGATTCCCAGAGACGTGACCGGTGTTTTGCTCTTGCTATATGTTccccatgtgcttttgtttgttttctgcctttgttttggttttggtcttGGTCCTGTCTCCATCCCCGTCACGTCATTGCTTTGCTctcctaatgtgtgcacctgtttcGTGTTAAGCCCTTTTAattagtttgtctgtttataccCTGATGTTATCATGTTTCGTTATTATTGTGCATTTCTGTACCGGTAAATTACGAGCCATGTTTTCTGACActtgcctgtgttttgaccttGATGTGCTTGTGTTTTGACCCCCTGCCATGTACTTAGACTTTCCATTATACGCGAGTTTTCAGCTAACAGGTTTTCTGGTCTTTTTCAGTACAGGGAATATATGATAATATTCATGTATCACAGATACACTACAGATACAGTGGATTAGATTAGGATTAAAAAACACTAGAGTATTCCTTTTTAAGACAGACGACTAGACAGAACATAACGGCAGCCGAAGATAAACTGTCATCGTCCACATTTGGCCCCGCCCCCTCAGCGTAGTGGATTGAGACTACAGGAAGTCAACGTTGTCCCTGTCACTGGTTTTTGATCGTGCTGGCTTTTACAGGTGGCTCTCTACAGGTGGGTTCACTGAGAAAACCCGGCACATGGGTGATAAATACTTATAAAACCTCATCTTCAGAGTCTCCTTCTCTTTCCTGTGGCTTCAGCAGACCCATCTCCATTGGTGGCATCCTCCTGAGTTTGGAACGTACCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24286 True 1384 lncRNA 0.38 2 2366609 2368218

Neighbor

gene id symbol gene type direction distance location
LOC113545943 cth coding upstream 441119 1908482 ~ 1925490 (+)
nit2 nit2,LOC107582734,LOC107685305,LOC107673472 coding upstream 462300 1893746 ~ 1904309 (+)
si:dkey-66a8.7 LOC108271843 coding upstream 482419 1877922 ~ 1884190 (+)
plcxd1 plcxd1,LOC108271842,LOC103035541,LOC107673474,LOC107711026,LOC107585164,LOC108441321 coding upstream 488792 1868286 ~ 1877817 (+)
jade3 jade3,LOC107585190 coding upstream 504469 1844079 ~ 1862140 (+)
her6 hes1 coding downstream 179414 2547632 ~ 2549332 (+)
LOC113545856 LOC108271686,LOC107709064 coding downstream 283876 2652094 ~ 2661787 (+)
crbn crbn,LOC107711034,LOC107748399 coding downstream 353041 2721259 ~ 2733138 (+)
ccdc174 ccdc174 coding downstream 374945 2743163 ~ 2748673 (+)
si:dkey-28n18.9 LOC108271812 coding downstream 383007 2751225 ~ 2759178 (+)
G20372 chd1l non-coding upstream 35725 2329407 ~ 2330884 (+)
G20208 ptger3,LOC107582843 non-coding upstream 392088 1970279 ~ 1974521 (+)
G20116 slc9a7,LOC107585158,LOC107711095,LOC107673530 non-coding upstream 558416 1806861 ~ 1808193 (+)
G20115 NA non-coding upstream 560851 1803136 ~ 1805758 (+)
G20113 NA non-coding upstream 564152 1802226 ~ 1802457 (+)
G20802 NA non-coding downstream 580392 2948610 ~ 2948846 (+)
G20807 NA non-coding downstream 583459 2951677 ~ 2951878 (+)
G20848 NA non-coding downstream 784096 3152314 ~ 3152514 (+)
G20856 NA non-coding downstream 842243 3210461 ~ 3210931 (+)
LOC113545973 NA non-coding downstream 847396 3215614 ~ 3218711 (+)
LOC113545932 gabrg3 other upstream 877830 1351753 ~ 1488779 (+)
cnga3a cnga3a,LOC108271559,LOC107733584,LOC108441138 other upstream 1270655 1082436 ~ 1095954 (+)
vdrb vdrb,LOC108272216,LOC107585146,LOC107673565,LOC108441087,LOC107667372,LOC107582718,LOC107733590,LOC107711077 other upstream 1364151 969957 ~ 1002458 (+)
G19395 LOC108272241 other upstream 1753883 609199 ~ 612726 (+)
LOC113545899 LOC108272223 other upstream 1808140 554222 ~ 558469 (+)
opa1 opa1,LOC107585173,LOC107722677,LOC107582739,LOC107711112,LOC107673572 other downstream 18481 2386699 ~ 2452689 (+)
vhl vhl other downstream 365894 2734112 ~ 2737993 (+)
col7a1 col7a1 other downstream 463935 2832153 ~ 2946856 (+)
trnaf-gaa_10 NA other downstream 618000 2986218 ~ 2986433 (+)
trnaf-gaa_11 NA other downstream 620585 2988803 ~ 2988875 (+)

Expression


Co-expression Network