G20802


Basic Information

Item Value
gene id G20802
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 2948610 ~ 2948846 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU24761
gtcttgagttcaaatcccagcatcaccaAATTACTACTGTTAGTCCCTTGCGCAatgcccttaaccctcaactgcttaagtctatcctgtctcagttgtaagTCACTTTAGATAAAAGAGTCAACCAAATGAGGTAAAGGTAAATGTCAAGTTGAAACCAAGTCAGCTGTCTTCCACCTGCCACACGTGAACTTCTCGCTGCTTGCTTTCCCACAATCTCTCTCATGTTCTTTAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24761 True 237 lncRNA 0.43 1 2948610 2948846

Neighbor

gene id symbol gene type direction distance location
ttll3 LOC108271814 coding upstream 125545 2809021 ~ 2823065 (+)
si:dkey-28n18.9 LOC108271812 coding upstream 189432 2751225 ~ 2759178 (+)
ccdc174 ccdc174 coding upstream 199937 2743163 ~ 2748673 (+)
crbn crbn,LOC107711034,LOC107748399 coding upstream 215472 2721259 ~ 2733138 (+)
LOC113545856 LOC108271686,LOC107709064 coding upstream 286823 2652094 ~ 2661787 (+)
trnaf-gaa_1 NA coding downstream 15976 2964822 ~ 2964894 (+)
trnaf-gaa_2 NA coding downstream 17588 2966434 ~ 2966506 (+)
trnaf-gaa_3 NA coding downstream 23954 2972800 ~ 2972872 (+)
trnaf-gaa_4 NA coding downstream 24983 2973829 ~ 2973901 (+)
trnaf-gaa_5 NA coding downstream 27353 2976199 ~ 2976271 (+)
G20401 NA non-coding upstream 580392 2366609 ~ 2368218 (+)
G20372 chd1l non-coding upstream 617726 2329407 ~ 2330884 (+)
G20208 ptger3,LOC107582843 non-coding upstream 974089 1970279 ~ 1974521 (+)
G20116 slc9a7,LOC107585158,LOC107711095,LOC107673530 non-coding upstream 1140417 1806861 ~ 1808193 (+)
G20115 NA non-coding upstream 1142852 1803136 ~ 1805758 (+)
G20807 NA non-coding downstream 2831 2951677 ~ 2951878 (+)
G20848 NA non-coding downstream 203468 3152314 ~ 3152514 (+)
G20856 NA non-coding downstream 261615 3210461 ~ 3210931 (+)
LOC113545973 NA non-coding downstream 266768 3215614 ~ 3218711 (+)
G20868 NA non-coding downstream 382916 3331762 ~ 3353685 (+)
col7a1 col7a1 other upstream 1754 2832153 ~ 2946856 (+)
vhl vhl other upstream 210617 2734112 ~ 2737993 (+)
opa1 opa1,LOC107585173,LOC107722677,LOC107582739,LOC107711112,LOC107673572 other upstream 495921 2386699 ~ 2452689 (+)
LOC113545932 gabrg3 other upstream 1459831 1351753 ~ 1488779 (+)
cnga3a cnga3a,LOC108271559,LOC107733584,LOC108441138 other upstream 1852656 1082436 ~ 1095954 (+)
trnaf-gaa_10 NA other downstream 37372 2986218 ~ 2986433 (+)
trnaf-gaa_11 NA other downstream 39957 2988803 ~ 2988875 (+)
trnaf-gaa_12 NA other downstream 41563 2990409 ~ 2990481 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other downstream 104485 3053331 ~ 3064027 (+)
LOC113545950 NA other downstream 233461 3182307 ~ 3193461 (+)

Expression


Co-expression Network