trnaf-gaa_2


Basic Information

Item Value
gene id trnaf-gaa_2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 2966434 ~ 2966506 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaf-gaa_2
GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTaaaggtccctggttcaatcccgGGTTTCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaf-gaa_2 True 73 tRNA 0.52 1 2966434 2966506

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_1 NA coding upstream 1540 2964822 ~ 2964894 (+)
LOC113545940 LOC107710997 coding upstream 10087 2948255 ~ 2956347 (+)
ttll3 LOC108271814 coding upstream 143369 2809021 ~ 2823065 (+)
si:dkey-28n18.9 LOC108271812 coding upstream 207256 2751225 ~ 2759178 (+)
ccdc174 ccdc174 coding upstream 217761 2743163 ~ 2748673 (+)
trnaf-gaa_3 NA coding downstream 6294 2972800 ~ 2972872 (+)
trnaf-gaa_4 NA coding downstream 7323 2973829 ~ 2973901 (+)
trnaf-gaa_5 NA coding downstream 9693 2976199 ~ 2976271 (+)
trnaf-gaa_6 NA coding downstream 11431 2977937 ~ 2978009 (+)
trnaf-gaa_7 NA coding downstream 13051 2979557 ~ 2979629 (+)
G20807 NA non-coding upstream 14556 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 17588 2948610 ~ 2948846 (+)
G20401 NA non-coding upstream 598216 2366609 ~ 2368218 (+)
G20372 chd1l non-coding upstream 635550 2329407 ~ 2330884 (+)
G20208 ptger3,LOC107582843 non-coding upstream 991913 1970279 ~ 1974521 (+)
G20848 NA non-coding downstream 185808 3152314 ~ 3152514 (+)
G20856 NA non-coding downstream 243955 3210461 ~ 3210931 (+)
LOC113545973 NA non-coding downstream 249108 3215614 ~ 3218711 (+)
G20868 NA non-coding downstream 365256 3331762 ~ 3353685 (+)
LOC117599318 NA non-coding downstream 413385 3379891 ~ 3382596 (+)
col7a1 col7a1 other upstream 19578 2832153 ~ 2946856 (+)
vhl vhl other upstream 228441 2734112 ~ 2737993 (+)
opa1 opa1,LOC107585173,LOC107722677,LOC107582739,LOC107711112,LOC107673572 other upstream 513745 2386699 ~ 2452689 (+)
LOC113545932 gabrg3 other upstream 1477655 1351753 ~ 1488779 (+)
cnga3a cnga3a,LOC108271559,LOC107733584,LOC108441138 other upstream 1870480 1082436 ~ 1095954 (+)
trnaf-gaa_10 NA other downstream 19712 2986218 ~ 2986433 (+)
trnaf-gaa_11 NA other downstream 22297 2988803 ~ 2988875 (+)
trnaf-gaa_12 NA other downstream 23903 2990409 ~ 2990481 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other downstream 86825 3053331 ~ 3064027 (+)
LOC113545950 NA other downstream 215801 3182307 ~ 3193461 (+)

Expression


Co-expression Network