trnaf-gaa_7


Basic Information

Item Value
gene id trnaf-gaa_7
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 2979557 ~ 2979629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaf-gaa_7
GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTaaaggtccctggttcgatcccgGGTTTCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaf-gaa_7 True 73 tRNA 0.53 1 2979557 2979629

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_6 NA coding upstream 1548 2977937 ~ 2978009 (+)
trnaf-gaa_5 NA coding upstream 3286 2976199 ~ 2976271 (+)
trnaf-gaa_4 NA coding upstream 5656 2973829 ~ 2973901 (+)
trnaf-gaa_3 NA coding upstream 6685 2972800 ~ 2972872 (+)
trnaf-gaa_2 NA coding upstream 13051 2966434 ~ 2966506 (+)
trnaf-gaa_8 NA coding downstream 2515 2982144 ~ 2982216 (+)
trnaf-gaa_9 NA coding downstream 4894 2984523 ~ 2984595 (+)
ip6k2b LOC108272042,LOC108440711,LOC103024783,LOC107585112,LOC107748392,LOC107582690,LOC107711042,LOC107673575,LOC107667389 coding downstream 40799 3020428 ~ 3027059 (+)
uroc1 uroc1 coding downstream 88759 3068388 ~ 3084335 (+)
si:dkey-197j19.6 LOC108271935 coding downstream 105423 3085052 ~ 3093630 (+)
G20807 NA non-coding upstream 27679 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 30711 2948610 ~ 2948846 (+)
G20401 NA non-coding upstream 611339 2366609 ~ 2368218 (+)
G20372 chd1l non-coding upstream 648673 2329407 ~ 2330884 (+)
G20208 ptger3,LOC107582843 non-coding upstream 1005036 1970279 ~ 1974521 (+)
G20848 NA non-coding downstream 172685 3152314 ~ 3152514 (+)
G20856 NA non-coding downstream 230832 3210461 ~ 3210931 (+)
LOC113545973 NA non-coding downstream 235985 3215614 ~ 3218711 (+)
G20868 NA non-coding downstream 352133 3331762 ~ 3353685 (+)
LOC117599318 NA non-coding downstream 400262 3379891 ~ 3382596 (+)
col7a1 col7a1 other upstream 32701 2832153 ~ 2946856 (+)
vhl vhl other upstream 241564 2734112 ~ 2737993 (+)
opa1 opa1,LOC107585173,LOC107722677,LOC107582739,LOC107711112,LOC107673572 other upstream 526868 2386699 ~ 2452689 (+)
LOC113545932 gabrg3 other upstream 1490778 1351753 ~ 1488779 (+)
cnga3a cnga3a,LOC108271559,LOC107733584,LOC108441138 other upstream 1883603 1082436 ~ 1095954 (+)
trnaf-gaa_10 NA other downstream 6589 2986218 ~ 2986433 (+)
trnaf-gaa_11 NA other downstream 9174 2988803 ~ 2988875 (+)
trnaf-gaa_12 NA other downstream 10780 2990409 ~ 2990481 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other downstream 73702 3053331 ~ 3064027 (+)
LOC113545950 NA other downstream 202678 3182307 ~ 3193461 (+)

Expression


Co-expression Network