sec61a1 (sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493)


Basic Information

Item Value
gene id sec61a1
gene name sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3053331 ~ 3064027 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU24794
ttttctttttttttttttctcctctccccCGCTTGCTGCTCGACTGTATGCAGTATAGTGATGGCAGTGCTCACTTCTCCGTCCTGCCCAGTCTTTCATTTAAAAGGTGCAGTGTTGCGTGTTTTTAACGCCACATTCTTTATTCTTGGCTGCTGTCAGTATGACGCCACGGGAATACTCAGACTCGCAGGATTGTTAGACTTTCGGTTGTGACGTCAAATCCAACCATATACATTTCatatagaacttttttttttaaggtggtGTTATCCAGGCTGGAAGCTGTCTAC
>XM_034314447.1
TAGCAAGGGCGGCTAATATGGTTGACGTGTATTTAGGAGTTGTATAGTGGTGACGTGTCTTTAAGGCGCTCCGCCGGCGCATCAACACTCGGAGCACAGATCCTCACCGAGCCTCACACCGAATAACACCACCATGGGGATTAAGTTCTTGGAGGTCATCAAGCCGTTCTGCGCGGTTTTACCCGAGATCCAGAAACCAGAAAGAAAGATCCAGTTCAGAGAAAAAGTGCTATGGACAGCCATCACCTTGTTCATCTTTCTCGTCTGCTGCCagATCCCTCTCTTTGGGATCATGTCCTCAGACTCAGCAGATCCCTTCTACTGGATGAGAGTCATTCTGGCTTCCAACAGGGGCACTCTGATGGAGTTGGGAATCTCCCCCATCGTGACCTCGGGCCTCATCATGCAGCTGCTGGCTGGAGCTAAAATCATTGAGGTCGGAGACACACCCAAAGACCGAGCGCTGTTTAACGGAGCCCAGAAATtgtttggGATGATCATCACTATTGGCCAGGCGATAGTGTACGTGATGACTGGCATGTACGGAGACCCGTCAGAGATGGGAGCCGGGATCTGTCTCCTCATCATCATTCAGCTGTTTGTGGCTGGTCTGATCGTGCTGCTGCTGGACGAGCTGCTTCAGAAAGGATACGGTTTGGGCTCAGGCATCTCCCTCTTCATCGCCACCAACATCTGTGAGACCATCGTATGGAAAGCCTTCAGTCCAACGACGGTGAACACAGGCAGAGGCACTGAGTTTGAGGGCGCCATCATTGCTCTGTTCCACTTGTTGGCCACTCGGACTGATAAAGTGCGCGCACTGAGAGAGGCCTTCTACAGGCAGAACCTGCCCAACCTCATGAACCTCATCGCTACCGTCTTCGTCTTCGCCGTGGTCATATACTTCCAGGGCTTCAGAGTGGATCTGCCCATCAAGTCTGCACGTTACCGTGGCCAATACAACACTTATCCCATCAAGCTTTTCTACACATCCAATATTCCCATCATCCTGCAGTCCGCACTGGTGTCCAACCTCTACGTCATCTCTCAGATGCTCTCCACTCGCTTCAGCGGCAACTTCCTGGTTAACCTGCTGGGAACCTGGTCTGACACATCGACCGGCGGTCCAGCTCGCGCGTATCCTGTAGGAGGTCTGTGTTACTATCTCTCTCCTCCGGAATCGTTTGGCTCCGTGTTGGAGGATCCGGTCCACGCCGTCATCTACATCGTCTTCATGCTTGGCTCCTGTGCCTTCTTCTCCAAGACGTGGATCGAAGTGTCAGGATCGTCTGCCAAAGATgtggCTAAACAGCTTAAGGAGCAGCAGATGGTGATGAGAGGACACCGAGAGACGTCCATGGTGCATGAACTCAACAGgtacATCCCCACAGCTGCTGCATTCGGTGGCCTGTGCATCGGCGGCCTCTCGGTCATGGCCGATTTCTTGGGAGCGATCGGCTCAGGAACGGGGATCTTACTGGCCGTCACTATCATCTACCAGTATTTTGAGATCTTCGTCAAGGAGCAGAGCGAAGTCGGCAGCATGGGGGCGCTACTCTTCTAAACCACCTGCAACATGGACACACGCGTACGCTGAGACACACCCTAAAcaaacacttttattatttttatgagtggtattactattattttatatatatatatatatttttgttttggcaCAGTGAGTTGAAGTGGTCCATTCTGAACAGCCAGGATTGGCTTTGAGATGCTGTTTGTTGGAGGGGAGagatatttatgaaaaaaactCTGGAGCGGTTAGTGATGAGTAAAGCTAGACTCTGTGAGCTCTGAAGATAgttgggtgggtggatggatgggtgaagCCTTCTCTCGTTTCACCTTCCAccccctct
>XM_034314450.1
CTAGCAAGGGCGGCTAATATGGTTGACGTGTATTTAGGAGTTGTATAGTGGTGACGTGTCTTTAAGGCGCTCCGCCGGCGCATCAACACTCGGAGCACAGATCCTCACCGAGCCTCACACCGAATAACACCACCATGGGGATTAAGTTCTTGGAGGTCATCAAGCCGTTCTGCGCGGTTTTACCCGAGATCCAGAAACCAGAAAGAAAGATCCAGTTCAGAGAAAAAGTGCTATGGACAGCCATCACCTTGTTCATCTTTCTCGTCTGCTGCCagATCCCTCTCTTTGGGATCATGTCCTCAGACTCAGCAGATCCCTTCTACTGGATGAGAGTCATTCTGGCTTCCAACAGGGGCACTCTGATGGAGTTGGGAATCTCCCCCATCGTGACCTCGGGCCTCATCATGCAGCTGCTGGCTGGAGCTAAAATCATTGAGGTCGGAGACACACCCAAAGACCGAGCGCTGTTTAACGGAGCCCAGAAATtgtttggGATGATCATCACTATTGGCCAGGCGATAGTGTACGTGATGACTGGCATGTACGGAGACCCGTCAGAGATGGGAGCCGGGATCTGTCTCCTCATCATCATTCAGCTGTTTGTGGCTGGTCTGATCGTGCTGCTGCTGGACGAGCTGCTTCAGAAAGGATACGGTTTGGGCTCAGGCATCTCCCTCTTCATCGCCACCAACATCTGTGAGACCATCGTATGGAAAGCCTTCAGTCCAACGACGGTGAACACAGGCAGAGGCACTGAGTTTGAGGGCGCCATCATTGCTCTGTTCCACTTGTTGGCCACTCGGACTGATAAAGTGCGCGCACTGAGAGAGGCCTTCTACAGGCAGAACCTGCCCAACCTCATGAACCTCATCGCTACCGTCTTCGTCTTCGCCGTGGTCATATACTTCCAGGGCTTCAGAGTGGATCTGCCCATCAAGTCTGCACGTTACCGTGGCCAATACAACACTTATCCCATCAAGCTTTTCTACACATCCAATATTCCCATCATCCTGCAGTCCGCACTGGTGTCCAACCTCTACGTCATCTCTCAGATGCTCTCCACTCGCTTCAGCGGCAACTTCCTGGTTAACCTGCTGGGAACCTGGTCTGACACATCGACCGGCGGTCCAGCTCGCGCGTATCCTGTAGGAGGTCTGTGTTACTATCTCTCTCCTCCGGAATCGTTTGGCTCCGTGTTGGAGGATCCGGTCCACGCCGTCATCTACATCGTCTTCATGCTTGGCTCCTGTGCCTTCTTCTCCAAGACGTGGATCGAAGTGTCAGGATCGTCTGCCAAAGATgtggCTAAACAGCTTAAGGAGCAGCAGATGGTGATGAGAGGACACCGAGAGACGTCCATGGTGCATGAACTCAACAGgtacATCCCCACAGCTGCTGCATTCGGTGGCCTGTGCATCGGCGGCCTCTCGGTCATGGCCGATTTCTTGGGAGCGATCGGCTCAGGAACGGGGATCTTACTGGCCGTCACTATCATCTACCAGTATTTTGAGATCTTCGTCAAGGAGCAGAGCGAAGTCGGCAGCATGGGGGCGCTACTCTTCTAAACCACCTGCAACATGGACACACGCTGAGTTGAAGTGGTCCATTCTGAACAGCCAGGATTGGCTTTGAGATGCTGTTTGTTGGAGGGGAGagatatttatgaaaaaaactCTGGAGCGGTTAGTGATGAGTAAAGCTAGACTCTGTGAGCTCTGAAGATAgttgggtgggtggatggatgggtgaagCCTTCTCTCGTTTCACCTTCCAccccctct

Function

symbol description
sec61a1 Predicted to enable protein transmembrane transporter activity; ribosome binding activity; and signal sequence binding activity. Involved in pronephric nephron development. Acts upstream of or within habenula development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of Sec61 translocon complex. Is expressed in several structures, including axis; digestive system; hatching gland; midbrain hindbrain boundary; and polster. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1).

NR:

description
PREDICTED: protein transport protein Sec61 subunit alpha-like 1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0021986 habenula development biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10956 SEC61A; protein transport protein SEC61 subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU24794 False 290 lncRNA 0.43 2 3059132 3064027
XM_034314447.1 True 1877 mRNA 0.51 12 3053332 3063749
XM_034314450.1 False 1781 mRNA 0.53 13 3053331 3063749

Neighbor

gene id symbol gene type direction distance location
ip6k2b LOC108272042,LOC108440711,LOC103024783,LOC107585112,LOC107748392,LOC107582690,LOC107711042,LOC107673575,LOC107667389 coding upstream 26272 3020428 ~ 3027059 (+)
trnaf-gaa_9 NA coding upstream 68736 2984523 ~ 2984595 (+)
trnaf-gaa_8 NA coding upstream 71115 2982144 ~ 2982216 (+)
trnaf-gaa_7 NA coding upstream 73702 2979557 ~ 2979629 (+)
trnaf-gaa_6 NA coding upstream 75322 2977937 ~ 2978009 (+)
uroc1 uroc1 coding downstream 4361 3068388 ~ 3084335 (+)
si:dkey-197j19.6 LOC108271935 coding downstream 21025 3085052 ~ 3093630 (+)
col28a2b LOC108271920,LOC108438056,LOC103354592,LOC103389749,LOC101477258,LOC102210360 coding downstream 36317 3100344 ~ 3141589 (+)
klhl41b LOC108271921,LOC103025159,LOC108438036,LOC107672655,LOC107557135,LOC107686793,LOC107582363,LOC107746633 coding downstream 80866 3144893 ~ 3151706 (+)
ppig ppig coding downstream 88741 3152768 ~ 3165749 (+)
G20807 NA non-coding upstream 101453 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 104485 2948610 ~ 2948846 (+)
G20401 NA non-coding upstream 685113 2366609 ~ 2368218 (+)
G20372 chd1l non-coding upstream 722447 2329407 ~ 2330884 (+)
G20208 ptger3,LOC107582843 non-coding upstream 1078810 1970279 ~ 1974521 (+)
G20848 NA non-coding downstream 88287 3152314 ~ 3152514 (+)
G20856 NA non-coding downstream 146434 3210461 ~ 3210931 (+)
LOC113545973 NA non-coding downstream 151587 3215614 ~ 3218711 (+)
G20868 NA non-coding downstream 267735 3331762 ~ 3353685 (+)
LOC117599318 NA non-coding downstream 315864 3379891 ~ 3382596 (+)
trnaf-gaa_12 NA other upstream 62850 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 64456 2988803 ~ 2988875 (+)
trnaf-gaa_10 NA other upstream 66898 2986218 ~ 2986433 (+)
col7a1 col7a1 other upstream 106475 2832153 ~ 2946856 (+)
vhl vhl other upstream 315338 2734112 ~ 2737993 (+)
LOC113545950 NA other downstream 118280 3182307 ~ 3193461 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other downstream 276419 3340446 ~ 3367287 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 486198 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 515721 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 664625 3728652 ~ 3742306 (+)

Expression


Co-expression Network