col28a2b (LOC108271920,LOC108438056,LOC103354592,LOC103389749,LOC101477258,LOC102210360)


Basic Information

Item Value
gene id col28a2b
gene name LOC108271920,LOC108438056,LOC103354592,LOC103389749,LOC101477258,LOC102210360
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3100344 ~ 3141589 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314833.1
actgtCCCTAACAACTCACACTCGCGCTCCGAGGCTCGGCGTGTCTCTTTCAATCCGTCCCTGTGAGATGTTCAGTGCTGTATAGTGGGTCAGTGGGATTGTGCTGAAACTCATGACAGCAGgtgcaaTGCGACTGCATGTGAGCTGCCTGGTTTTGCTGCTCGGGCTGCAGTGTGTTTGGGCTCAGCAGGACGATTATGAGGAAGActatgatgaagaagaagaggaagagaggaacaTCAGAAGAAAAGCCAAAAGCAAAGTGCTCACCTCCAACCTCACACCAAAAACCAACGCTCAGTCACACATAAATGAAGACTGCAGTCTTGAGCTAGCATTTTTGCTGGACAGCTCCGAAAGTGCCAAGGACAACCACGGCCAAGAGAAGCGATTAGTCAGTGAGGTGGTTGAGCGCATGCAGAACGTGAACCTCCAGAGTGGACGAAGCCTGAGCTTTAGATCTGCACTCCTTCAGTACAGCAGTCACGTCATTCCCGAGCAGACCTTCAGCCAGTGGAGGGGCGTGGCCAACTTCAAAGCCAACATCGCACCCATTTCCTACATTGGGCAAGGCACGTACGTGACGTACGCCATCACAAACCTCACACGCCTCTACCTGAACGAATCAGGAACTGGAAGTGTCAAAGTGGCTGTGCTGCTCTATGATGGAGAGTCCCATCCAAAGAATCCAGACTTATTTTCTGCTGTGGCTGATGCCAAGAACCAAGGAGTTCGATTTTTTGCCATTGGTGTCACACCGGCTGCCAGAGAGACATCCAAAATGGCGCAGCTGAGGATGCTGGCCAGTTCTCCACCAATCCGCTACTTACACAACCTACAAGATAAAGACATCGTAAAGAAGATCATTAAAGAGCTGACGGCGTTGGCAGATGAGGCGTGTCCTCTGGAGAAGAGATGTACAtgtgagaaaggagagaaaggacCAAGTGGGCCAGCTGGGAAAAGGGGTCGCCCAGGAGATGATGGAAGTCCGGGGCCGAAAGGGCAGAAGGGTGAGAGCGGACTTCAAGGGCTGCCAGGGCAAAACGGCTCCGAGGGCAAACCGGGAAGTAGAGGAGAAAAGGGAGAGAGAGGTGAATGCGGGATGCCTGGTGTCAaaggagacagaGGTCCTGAAGGTCCAGTGGGCATCAGTGGAAACAGAGGACTGCAGgGTTTGCCTGGACCTAACGGTGACACCGGACCCCAGGGACCACCAGGACACAAAggagAGAGGGGCTTTCCTGGACCACCTGGACTTCAGGGTGAAACTGGAATAGGTCTTGCTGGACCAAAGggtgagATGGGACTTCAGGGCAGAGCTGGACCTCCCGGACCTCCAGGACTTGGAGAACCTGGCCTAccagggccTCAGGGGCCACAGGGAGTGCAGGGAGAGAAAGGACCTCAAGGAGACGGATTTCCTGGGCCAAAGggagagagaggaccAGAGGGCCCGAGGGGACAGAGAGGACCAGCTGGACCTGGAATTAAAGGAGACAAGGGTGACTATGGATCTCCTGGGTTACCTGGACCAACTGGGCTTCCTGGATTAGGTGTACAAGGAGAAAAGGGTGTTGAGGGACCACGTGGACCGCCAGGATTCAGAGGCCCACCAGGAGGAGGTTATCCAGGACCGAAGGGTGATCAAGGATTACCAGGAGAAGTCGGAGCACCAGGAGGGAGTGGAGTGGGAGAACCAGGACcaaagGGTGAACCAGGAGCTCCAGGGTTATCAGGTTTACCGGGGTTACCTGGAGAGGATGGCGCTCCTGGACAAAAGggggaGCCTGGGGTTCCAGGTTCGAGAGGGCCAGAGGGAGTGGCAGGTGTTGGAACACAGGGAGAAAAGGGAGATCAGGGCCAGAGAGGAGTCCGAGGTTTAGCAGGACCTCCGGGAATCACCGGACCGTCAGGAGCAAAGGGTGAACCAGGAGCACCAGGACGTCTCGGCTTACCAGGACCTCAAGGACGTGCAGTAATTGGAGCAAAGGGTGATGCAGGACCACCAGGTCCTCCAGGACCAATGGGGGAGACAGGATATGGACTTCCTGGACCAAAGGGTGATCGTGGAGATGCAGGTCCTCCTGGTCCATTTGGGCCAAAAGGAGATGGCTACCCTGGTCCACCGGGTCCATCTGGGCTTCCCGGGCTTCCTGGAGAGCCTGGTCCAGAGGGTTTGGGTCTCCCGGGACCAAAGggtGATATTGGGTTTAGAGGTTTGCCAGGGCCACCAGGACCACCAGGAGAGGGACTTCAAGGACCACCAGGCAATACAGGAAGGCCAGGACCTCCTGGTCCACTAGGACCCCCAGGGCAAGGGATACAAGGGCCGAAgGGTGAGTTTGGAGCTCAGGGCTTGGTTGGGCCAAGGGGACCACCTGGAGAGGGTCTcccagggtcaaagGGTGATCGTGGTGCTCAAGGGGATAGAGGCCCGAAAGGGGTCAAAGGTGACACTGGGGACCCTGGATCATCAGGCCAACCAGGTCGACAGGGAGTGAAAGGAGAGTCAGGTCTGACGAGAGAAGACGTTATCAGAATGATACGAGAAATATGCGGATGCGGGATTAAATGTAAGGAGCGTCCAATGGAGCTGGTCTTCGTGATTGACAGCTCAGAGAGCGTTGGCCCTGAGAACTTTGAGATCGTGAAGGACTTTGTGACGGCGCTGGTAGAGCGAGTGACGGTAGGAAATGGTGCCACACGAGTCGGCCTTGTGCTCTACAGCCTGGAGGCTCGACTGGAGTTCGACCTCGCCAGATACGCCACGAAGCGTGATGTCAAACATGCCGTGCGCAGGATGACCTACATGGGTGAGGGCACTTACACGGGCACAGCCATCCGCAAAGCCACTCGTGAGGCCTTCCGCAGCTCTCGTTCTGGGGTCGCCAAGGTCATTGTGGTCATCACAGATGGACAAACGGATGAGCGCGACTCTGTCAAGCTGGAAATCGCAGTGCGGGAGGCGCACGCTGCCAACATTGAGATGTTTGCTCTGGGCATCGTGAATGCCAGTGATCCAGCACAGGCCGAGTTTCTCCGGGAGCTCGATCTCATCGCCTCGGACCCTGATAGTGAGCATGTCTTTCAGATAGATGACTTTAATACCCTACCAGCTCTGGAATCCAAACTGGTCAGTCAGTTCTGCGAGGATGAGAACGGTGATATATTCAACCGCATTAATGGCAATGGATACAATAACCATGCCAACCGCATCAATGGCCTCCTGTATGGGTTTGATAACAATGGAAACCGCATCAGCAATGGTGGATATTATCACGGAAACAACGTAGACCCAACACATACCAGGACACATTCTGGGACACATTCTGGtacttatacacacactggaACTCACAGTGGGAAACACAACAGTACTCACAGTGGGACACACACTGGTGCGCACAGTGGGACACACACCAGAACTCACAGTGGGACACACTCCGGTACTCACAGTGGGACACACACTGGAACTCACAGTGGGACACACACCGGAACTCACAGTGGgacacacactgtctcagtcAGTCATGGAGGTGGAAGAGGTGACAGTCTTCCAGTACCTGTCACTCCAGGGGTACCACTCACCATAGATATTCACACACATGGCAGCTCAGAGCACAGCAACAGGGGAGATGTTCCATCACACAACAGACCATCTACACACGGCagaccttcatcatcatcatcatcatcatcatcaactgTAATCACGTCATCCACTTCAGTGCATTATGTCCCTGCCCCACGACCTCCTTTACCTAAAGAAATCGTACCCCTGGACCCACGCTGTGAGCTGGTCCTGGATCAGGGTTCGTGTCGTGATTATAGCATCCGCTGGTACTATGACCGCAACGCCAACGCCTGTGCGCAGTTCTGGTATGGAGGTTGTCATGGCAACCGCAATCGATTTGATACTGAGGACGAGTGCAAGAAGACCTGTGTGGTCCCAcgaacaggaGGATGAGGAGCATTGAGAATGctgaaaacatgacattgaCTGTTATAATATCTGTAATACCTCATCTGTCAATCTCCCTGAgagatgtgcatgtaaatggcttaaatgtgtttttcaaaTTGTTAACACTCATAAGCTCCACAGCTGTGATTTGTTGTGTACATACATTATATCCTTAAGTACTGGACTGTTTTTACAGCAGCACCTGTAATCAGAGATCAGGTGCAGCTCTGAACCTCTGAGTGAACCATCAGAACTGTGTTTATTGCATCAAACACCAATACGAAATTTGACTTGGTTGATAATTATAGTTTAAGACCTTTTTTGAATTTTCAaatgcttgttctaatacatttgtattttatttctatattaagAACtcacacagggacttttatggtATATGCTCTACATAAACAGACTTAAAAACCATATAACTGTTGATATAGCGAAGAATTtcgtgttatttaacaaagaaaaatgtttaaacatttatatagtttactgtgaggagatgtttatttaacatttatggaaggagtctccagtgtcagtgctttgtaatagtcggAGGTTAAAGCTGTAAATTGTAGGTTTTCTGCcctgggaaagtcttcaggaaagagacTTTTGAGCTTTTCAGTTTCCTAATGATGcattgttagcaaattgctgttgtataagaggaataaaagattttgggatgtgatgttataggaaaataatcaactttggggtgaaCTGCATTTCATCTGAGTAcaccatcgttgattattttcatataacaacaGGCGACAAGTGTttctattccttacataattagTACATTGAGTTCTTATGCATTATGTTATTGTCACTGCTTTCAGTCAGTAAGGACATTGAGTTTCAACTGGTGAATTTTGGAAAAATCTAATTTGATAATtagatattgattttttttttttgctaaatgacAGGGATATTTATAGTTCTTCTGTTTATTGCATTATGACCTGCGTGTTATGATCTTCAGAATAGCTGTGAACAAGTCATGTTTCATAATTAACATCTTACTTCCACTTAGTATGTGTTTGATTTGTGTCTGTAATGTTGTTTGTATTATTCTAGCTTTCATGCAGCAAACTTTTGTAATAAAAAGGTTTACAATCATTATCCAGATCAGGGTCACATTGGATCTGAAGTCTA
>XM_034314839.1
TACTGCGGCcataagaaagagagaagcGGATGTCTTACTCATCTTTTATAGAGACGGCGTTGGCAGATGAGGCGTGTCCTCTGGAGAAGAGATGTACAtgtgagaaaggagagaaaggacCAAGTGGGCCAGCTGGGAAAAGGGGTCGCCCAGGAGATGATGGAAGTCCGGGGCCGAAAGGGCAGAAGGGTGAGAGCGGACTTCAAGGGCTGCCAGGGCAAAACGGCTCCGAGGGCAAACCGGGAAGTAGAGGAGAAAAGGGAGAGAGAGGTGAATGCGGGATGCCTGGTGTCAaaggagacagaGGTCCTGAAGGTCCAGTGGGCATCAGTGGAAACAGAGGACTGCAGgGTTTGCCTGGACCTAACGGTGACACCGGACCCCAGGGACCACCAGGACACAAAggagAGAGGGGCTTTCCTGGACCACCTGGACTTCAGGGTGAAACTGGAATAGGTCTTGCTGGACCAAAGggtgagATGGGACTTCAGGGCAGAGCTGGACCTCCCGGACCTCCAGGACTTGGAGAACCTGGCCTAccagggccTCAGGGGCCACAGGGAGTGCAGGGAGAGAAAGGACCTCAAGGAGACGGATTTCCTGGGCCAAAGggagagagaggaccAGAGGGCCCGAGGGGACAGAGAGGACCAGCTGGACCTGGAATTAAAGGAGACAAGGGTGACTATGGATCTCCTGGGTTACCTGGACCAACTGGGCTTCCTGGATTAGGTGTACAAGGAGAAAAGGGTGTTGAGGGACCACGTGGACCGCCAGGATTCAGAGGCCCACCAGGAGGAGGTTATCCAGGACCGAAGGGTGATCAAGGATTACCAGGAGAAGTCGGAGCACCAGGAGGGAGTGGAGTGGGAGAACCAGGACcaaagGGTGAACCAGGAGCTCCAGGGTTATCAGGTTTACCGGGGTTACCTGGAGAGGATGGCGCTCCTGGACAAAAGggggaGCCTGGGGTTCCAGGTTCGAGAGGGCCAGAGGGAGTGGCAGGTGTTGGAACACAGGGAGAAAAGGGAGATCAGGGCCAGAGAGGAGTCCGAGGTTTAGCAGGACCTCCGGGAATCACCGGACCGTCAGGAGCAAAGGGTGAACCAGGAGCACCAGGACGTCTCGGCTTACCAGGACCTCAAGGACGTGCAGTAATTGGAGCAAAGGGTGATGCAGGACCACCAGGTCCTCCAGGACCAATGGGGGAGACAGGATATGGACTTCCTGGACCAAAGGGTGATCGTGGAGATGCAGGTCCTCCTGGTCCATTTGGGCCAAAAGGAGATGGCTACCCTGGTCCACCGGGTCCATCTGGGCTTCCCGGGCTTCCTGGAGAGCCTGGTCCAGAGGGTTTGGGTCTCCCGGGACCAAAGggtGATATTGGGTTTAGAGGTTTGCCAGGGCCACCAGGACCACCAGGAGAGGGACTTCAAGGACCACCAGGCAATACAGGAAGGCCAGGACCTCCTGGTCCACTAGGACCCCCAGGGCAAGGGATACAAGGGCCGAAgGGTGAGTTTGGAGCTCAGGGCTTGGTTGGGCCAAGGGGACCACCTGGAGAGGGTCTcccagggtcaaagGGTGATCGTGGTGCTCAAGGGGATAGAGGCCCGAAAGGGGTCAAAGGTGACACTGGGGACCCTGGATCATCAGGCCAACCAGGTCGACAGGGAGTGAAAGGAGAGTCAGGTCTGACGAGAGAAGACGTTATCAGAATGATACGAGAAATATGCGGATGCGGGATTAAATGTAAGGAGCGTCCAATGGAGCTGGTCTTCGTGATTGACAGCTCAGAGAGCGTTGGCCCTGAGAACTTTGAGATCGTGAAGGACTTTGTGACGGCGCTGGTAGAGCGAGTGACGGTAGGAAATGGTGCCACACGAGTCGGCCTTGTGCTCTACAGCCTGGAGGCTCGACTGGAGTTCGACCTCGCCAGATACGCCACGAAGCGTGATGTCAAACATGCCGTGCGCAGGATGACCTACATGGGTGAGGGCACTTACACGGGCACAGCCATCCGCAAAGCCACTCGTGAGGCCTTCCGCAGCTCTCGTTCTGGGGTCGCCAAGGTCATTGTGGTCATCACAGATGGACAAACGGATGAGCGCGACTCTGTCAAGCTGGAAATCGCAGTGCGGGAGGCGCACGCTGCCAACATTGAGATGTTTGCTCTGGGCATCGTGAATGCCAGTGATCCAGCACAGGCCGAGTTTCTCCGGGAGCTCGATCTCATCGCCTCGGACCCTGATAGTGAGCATGTCTTTCAGATAGATGACTTTAATACCCTACCAGCTCTGGAATCCAAACTGGTCAGTCAGTTCTGCGAGGATGAGAACGGTGATATATTCAACCGCATTAATGGCAATGGATACAATAACCATGCCAACCGCATCAATGGCCTCCTGTATGGGTTTGATAACAATGGAAACCGCATCAGCAATGGTGGATATTATCACGGAAACAACGTAGACCCAACACATACCAGGACACATTCTGGGACACATTCTGGtacttatacacacactggaACTCACAGTGGGAAACACAACAGTACTCACAGTGGGACACACACTGGTGCGCACAGTGGGACACACACCAGAACTCACAGTGGGACACACTCCGGTACTCACAGTGGGACACACACTGGAACTCACAGTGGGACACACACCGGAACTCACAGTGGgacacacactgtctcagtcAGTCATGGAGGTGGAAGAGGTGACAGTCTTCCAGTACCTGTCACTCCAGGGGTACCACTCACCATAGATATTCACACACATGGCAGCTCAGAGCACAGCAACAGGGGAGATGTTCCATCACACAACAGACCATCTACACACGGCagaccttcatcatcatcatcatcatcatcatcaactgTAATCACGTCATCCACTTCAGTGCATTATGTCCCTGCCCCACGACCTCCTTTACCTAAAGAAATCGTACCCCTGGACCCACGCTGTGAGCTGGTCCTGGATCAGGGTTCGTGTCGTGATTATAGCATCCGCTGGTACTATGACCGCAACGCCAACGCCTGTGCGCAGTTCTGGTATGGAGGTTGTCATGGCAACCGCAATCGATTTGATACTGAGGACGAGTGCAAGAAGACCTGTGTGGTCCCAcgaacaggaGGATGAGGAGCATTGAGAATGctgaaaacatgacattgaCTGTTATAATATCTGTAATACCTCATCTGTCAATCTCCCTGAgagatgtgcatgtaaatggcttaaatgtgtttttcaaaTTGTTAACACTCATAAGCTCCACAGCTGTGATTTGTTGTGTACATACATTATATCCTTAAGTACTGGACTGTTTTTACAGCAGCACCTGTAATCAGAGATCAGGTGCAGCTCTGAACCTCTGAGTGAACCATCAGAACTGTGTTTATTGCATCAAACACCAATACGAAATTTGACTTGGTTGATAATTATAGTTTAAGACCTTTTTTGAATTTTCAaatgcttgttctaatacatttgtattttatttctatattaagAACtcacacagggacttttatggtATATGCTCTACATAAACAGACTTAAAAACCATATAACTGTTGATATAGCGAAGAATTtcgtgttatttaacaaagaaaaatgtttaaacatttatatagtttactgtgaggagatgtttatttaacatttatggaaggagtctccagtgtcagtgctttgtaatagtcggAGGTTAAAGCTGTAAATTGTAGGTTTTCTGCcctgggaaagtcttcaggaaagagacTTTTGAGCTTTTCAGTTTCCTAATGATGcattgttagcaaattgctgttgtataagaggaataaaagattttgggatgtgatgttataggaaaataatcaactttggggtgaaCTGCATTTCATCTGAGTAcaccatcgttgattattttcatataacaacaGGCGACAAGTGTttctattccttacataattagTACATTGAGTTCTTATGCATTATGTTATTGTCACTGCTTTCAGTCAGTAAGGACATTGAGTTTCAACTGGTGAATTTTGGAAAAATCTAATTTGATAATtagatattgattttttttttttgctaaatgacAGGGATATTTATAGTTCTTCTGTTTATTGCATTATGACCTGCGTGTTATGATCTTCAGAATAGCTGTGAACAAGTCATGTTTCATAATTAACATCTTACTTCCACTTAGTATGTGTTTGATTTGTGTCTGTAATGTTGTTTGTATTATTCTAGCTTTCATGCAGCAAACTTTTGTAATAAAAAGGTTTACAATCATTATCCAGATCAGGGTCACATTGGATCTGAAGTCTA

Function

NR:

description
PREDICTED: collagen alpha-1(XXVIII) chain-like

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314833.1 True 5149 mRNA 0.50 36 3100344 3141589
XM_034314839.1 False 4325 mRNA 0.49 34 3114459 3141589

Neighbor

gene id symbol gene type direction distance location
si:dkey-197j19.6 LOC108271935 coding upstream 6714 3085052 ~ 3093630 (+)
uroc1 uroc1 coding upstream 16009 3068388 ~ 3084335 (+)
ip6k2b LOC108272042,LOC108440711,LOC103024783,LOC107585112,LOC107748392,LOC107582690,LOC107711042,LOC107673575,LOC107667389 coding upstream 73285 3020428 ~ 3027059 (+)
trnaf-gaa_9 NA coding upstream 115749 2984523 ~ 2984595 (+)
trnaf-gaa_8 NA coding upstream 118128 2982144 ~ 2982216 (+)
klhl41b LOC108271921,LOC103025159,LOC108438036,LOC107672655,LOC107557135,LOC107686793,LOC107582363,LOC107746633 coding downstream 3304 3144893 ~ 3151706 (+)
ppig ppig coding downstream 11179 3152768 ~ 3165749 (+)
LOC113545949 LOC108271656 coding downstream 26449 3168038 ~ 3181389 (+)
LOC113545972 LOC108272174,LOC108271666,LOC108262055,LOC108271668 coding downstream 77751 3219340 ~ 3224174 (+)
phospho2 phospho2 coding downstream 88133 3229722 ~ 3232728 (+)
G20807 NA non-coding upstream 148466 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 151498 2948610 ~ 2948846 (+)
G20401 NA non-coding upstream 732126 2366609 ~ 2368218 (+)
G20372 chd1l non-coding upstream 769460 2329407 ~ 2330884 (+)
G20208 ptger3,LOC107582843 non-coding upstream 1125823 1970279 ~ 1974521 (+)
G20848 NA non-coding downstream 10725 3152314 ~ 3152514 (+)
G20856 NA non-coding downstream 68872 3210461 ~ 3210931 (+)
LOC113545973 NA non-coding downstream 74025 3215614 ~ 3218711 (+)
G20868 NA non-coding downstream 190173 3331762 ~ 3353685 (+)
LOC117599318 NA non-coding downstream 238302 3379891 ~ 3382596 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 36317 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 109863 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 111469 2988803 ~ 2988875 (+)
trnaf-gaa_10 NA other upstream 113911 2986218 ~ 2986433 (+)
col7a1 col7a1 other upstream 153488 2832153 ~ 2946856 (+)
LOC113545950 NA other downstream 40718 3182307 ~ 3193461 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other downstream 198857 3340446 ~ 3367287 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 408636 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 438159 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 587063 3728652 ~ 3742306 (+)

Expression


Co-expression Network