hdac7b (LOC108271830)


Basic Information

Item Value
gene id hdac7b
gene name LOC108271830
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 1009882 ~ 1028176 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310874.1
CTGCACAGAGAGCAGAGTCAGAGAGAGGTGTGTTTTTGGtcttatttaaacaaaactcTCAGCTCACAATCTTTCCTCCTGCTCTCAGTCCTGATTGTGACACACTGAAGAAtGTAAAGCACTcacttgctgttccaatactttcggaggggactgtgtgaTGGCCAGTGCAGAGGTGAAGCAGAGGCTGCAGAGGTCCATTTTAAGTCGTCAGAGTCTTAAACAAGCCGAGACTCAACGAGAGATGGCCCATATCTCTGAGCTAAATTTACAGCATGAGCATCCAAAcacacctccattttcacaacACAGAAGAAAGCAGCTGAGGAGAAccgCCTCTGAATTTGTTCTGAAGCCCAAAAACAAGAGCTCTTCATTCAGCAGCAAGAATCCTCttcacaactcgTTCCGCAGCAGCAGTAACCTCCTCGCATGTCAGTGCTCTCCACCTTCAGATCGGTCCGATCACACGTCGCTGCTGCAGGACTTCAGCGTACATACGCACCCTCAGATGGACAGGAATCCGAGCTTCATCGGGCCGTTGAAGATGTGGATCCAGGCTCCTGTCACTGTCCCACGTGAAGACATGTTACACCACGCCATCTTACTGGAACAAGTGTACATGGATACAGCCGTGTTCACCAATCCTCACCTGGCCGTCGTCCCGGCAGtgtgtatcagtgtgagcCAGCACAGGCCGATACAGAGATGTCATTCACAGCCTCTGATCCTTAGCAAACAGCCGAGGAGATTTCATCAGCATCACTGCTTACGATTACCAGGGAAACCctcacacacatattcaATCCCACAGAGCCTGTGTGTAATCCCCTGTGAACAGCACCACCCAGTGGTGGAGGAGAGAACAGCAGtgcaggagaaggagaaagttTGGTTTACGGCTGGAGAGGACTACAGCATGAGTCTCCAGAGCGAGTTCTGTGAAGAACCCAGAAGCAATGAGTCGGGTTGCTCATCACACCTGTCTCCCAGCGATAAGCAGTGGCAGCGCAGACAAgctttcagaatgcacaacagaTCACATCAGCCAGTGGCACAcaccctctcctctcctcccgcCTACATCCTGCCTGACACTGCTGACTCCGCCCCTGACCACGCCCACAGCACAGGTGACAACATAGAGCACAGCACAGggctGGTGTATGACCCACATATGCTGAAGAAGGAGTGTATCTGTGGTAAGAGCAGCTGTGACCTTAAGCATGCTGGGAAAATTCCAAAGGTGTTAGTGAGACTGCATGAATGTGGAGTCAGTCATCAGTGTAAGtgGATCACAGGCAGCAAGTGCAGTGTGGAGATGCCTTATCAGACCAACACTTCAGCAGTGACGATGGCAGCAAACTGTGTAATAGAGCTCGTGCTGCTCGTGGCAGAGGGTCGGCTGAGGAACGGCTTTGCAATAGTACAACCACATGGACAAGATGCCTCACACTCATCCCCCTCTAAGTCAGTGAATAGTTTTAATCCAGTAGCACTTGCTGCTGAACAGCTCCGGAAAACACATAATAAGAGAAAGATTCTCATTCTTGACTGGGATTTTCATCACTGTGATATCACTCAGGAAATGTTCTACACAGACCCGAACGTTCTCCACATCTCTCTGCATCGCGGCGACGGCATGCCCAGCGCTGTGAGAGGACGAGCTGATGAAGTGGGCTCGGGTGAAGGAGAAGGTTTTAACGTCAACGTGGAATGGTTATGTGGAATGGACCCACCCATAGGAGACGCAGAATACTTGGCAGCATTTAGGACGGTGATCAAGCCGATTGCTCAGCAGTTCTCCCCTGACGTCATCCTGATTTCCACCGGGTTTAACACCGTCGACGGTCATCCATCGTCTCAGGGAGGACTGAGAGTATCCGCGAAATgtttTGGGCTCCTCACTCAGAACCTGATGGAGCTCTCCGGAGGTCGCGTGGTCGTGGTGTTAGAGCGAGATCATGACGTTACGGCCGTGTGTGAGGCGTCTAAGGCGTGTATTAACGCTCTGTTAGACAACAAGgttgcGTCTCTGTCGGAGGACGTCCTGATGAAGAAGCCGTGTGCTGCAGCAGTTCATTCTCTATACAGAGTTCTGCAGATccacaGTCAGTACTGGTCATCTGTGAGAGCTCTGACACACACCGTAGGTGAGTCGTGGTTACAGGCTGAGAGGAAACATTCAGCGCACACGGACACGGCCTCAGCCCTCGCCTTGCTCAGCATGACCACCCCGAATTACACCGGGTTCGGTTGTGGAGGAACCGAGCCGGTGGAGCACGACGAGGACGAGGACGGAACTCCAACGTGACCTGATCGAGGCGAGACGAGACAACGGACCAAACGCAGAAACCTGAAACTTTCCAGGTTTTTTCCTTATTTCTGAAGCTCTGGAAAAAATATCCATTTTTTACccgttttatattttatacccATATTTCTTATGGGCTAGAGACAAAAAAGagcttttatacacacacacacacacacacacacacacattaattattgtgttgttttattgcttggatagttttgtgttgtttttgacttttttggaaattttttttacagtttttattatttttaattaaaggtcaaaaaatagatttttcatGGCATTAGCAGAAATTCAGTCCattaaaatatgaagaaaattaaaacacacttttacTGTGAGTATTTGCTTTACTTAATTTTACATAAACAAAATCAaagtattaaaaacaaatttatttagaTTTCTACTGTGTTctcatttatgttttaaaacttcttaaaaaagaattttatcTGAAATACTATCCAAGTTATGGcttaaggacaaaaaaaaaatcctaaaaatatGCCTTgattcatttgtatttgtttttttactatttttgtaAAAGATTAATTTGCACACtcggtttattattattttatttatagttgaTGTTGTAGTGTGGAAGTTTTTTTAAGGAACTTTGTGTGGACGCTTATTAacaacttttatttgtataattcataaaaaaagaaatagatagagtatacaaatatataatgtataaaaac
>XM_034310878.1
cgtgctgttataggagaagaagcttttttttgttctcatgaGCTCCTACTCTTAACGTGTGTGAAGTTCCGAATCTTGCACATGTTTGtcttgtttcctgtttttgctgtgatggacaggtgtgaTGGCCAGTGCAGAGGTGAAGCAGAGGCTGCAGAGGTCCATTTTAAGTCGTCAGAGTCTTAAACAAGCCGAGACTCAACGAGAGATGGCCCATATCTCTGAGCTAAATTTACAGCATGAGCATCCAAAcacacctccattttcacaacACAGAAGAAAGCAGCTGAGGAGAAccgCCTCTGAATTTGTTCTGAAGCCCAAAAACAAGAGCTCTTCATTCAGCAGCAAGAATCCTCttcacaactcgTTCCGCAGCAGCAGTAACCTCCTCGCATGTCAGTGCTCTCCACCTTCAGATCGGTCCGATCACACGTCGCTGCTGCAGGACTTCAGCGTACATACGCACCCTCAGATGGACAGGAATCCGAGCTTCATCGGGCCGTTGAAGATGTGGATCCAGGCTCCTGTCACTGTCCCACGTGAAGACATGTTACACCACGCCATCTTACTGGAACAAGTGTACATGGATACAGCCGTGTTCACCAATCCTCACCTGGCCGTCGTCCCGGCAGtgtgtatcagtgtgagcCAGCACAGGCCGATACAGAGATGTCATTCACAGCCTCTGATCCTTAGCAAACAGCCGAGGAGATTTCATCAGCATCACTGCTTACGATTACCAGGGAAACCctcacacacatattcaATCCCACAGAGCCTGTGTGTAATCCCCTGTGAACAGCACCACCCAGTGGTGGAGGAGAGAACAGCAGtgcaggagaaggagaaagttTGGTTTACGGCTGGAGAGGACTACAGCATGAGTCTCCAGAGCGAGTTCTGTGAAGAACCCAGAAGCAATGAGTCGGGTTGCTCATCACACCTGTCTCCCAGCGATAAGCAGTGGCAGCGCAGACAAgctttcagaatgcacaacagaTCACATCAGCCAGTGGCACAcaccctctcctctcctcccgcCTACATCCTGCCTGACACTGCTGACTCCGCCCCTGACCACGCCCACAGCACAGGTGACAACATAGAGCACAGCACAGggctGGTGTATGACCCACATATGCTGAAGAAGGAGTGTATCTGTGGTAAGAGCAGCTGTGACCTTAAGCATGCTGGGAAAATTCCAAAGGTGTTAGTGAGACTGCATGAATGTGGAGTCAGTCATCAGTGTAAGtgGATCACAGGCAGCAAGTGCAGTGTGGAGATGCCTTATCAGACCAACACTTCAGCAGTGACGATGGCAGCAAACTGTGTAATAGAGCTCGTGCTGCTCGTGGCAGAGGGTCGGCTGAGGAACGGCTTTGCAATAGTACAACCACATGGACAAGATGCCTCACACTCATCCCCCTCTAAGTCAGTGAATAGTTTTAATCCAGTAGCACTTGCTGCTGAACAGCTCCGGAAAACACATAATAAGAGAAAGATTCTCATTCTTGACTGGGATTTTCATCACTGTGATATCACTCAGGAAATGTTCTACACAGACCCGAACGTTCTCCACATCTCTCTGCATCGCGGCGACGGCATGCCCAGCGCTGTGAGAGGACGAGCTGATGAAGTGGGCTCGGGTGAAGGAGAAGGTTTTAACGTCAACGTGGAATGGTTATGTGGAATGGACCCACCCATAGGAGACGCAGAATACTTGGCAGCATTTAGGACGGTGATCAAGCCGATTGCTCAGCAGTTCTCCCCTGACGTCATCCTGATTTCCACCGGGTTTAACACCGTCGACGGTCATCCATCGTCTCAGGGAGGACTGAGAGTATCCGCGAAATgtttTGGGCTCCTCACTCAGAACCTGATGGAGCTCTCCGGAGGTCGCGTGGTCGTGGTGTTAGAGCGAGATCATGACGTTACGGCCGTGTGTGAGGCGTCTAAGGCGTGTATTAACGCTCTGTTAGACAACAAGgttgcGTCTCTGTCGGAGGACGTCCTGATGAAGAAGCCGTGTGCTGCAGCAGTTCATTCTCTATACAGAGTTCTGCAGATccacaGTCAGTACTGGTCATCTGTGAGAGCTCTGACACACACCGTAGGTGAGTCGTGGTTACAGGCTGAGAGGAAACATTCAGCGCACACGGACACGGCCTCAGCCCTCGCCTTGCTCAGCATGACCACCCCGAATTACACCGGGTTCGGTTGTGGAGGAACCGAGCCGGTGGAGCACGACGAGGACGAGGACGGAACTCCAACGTGACCTGATCGAGGCGAGACGAGACAACGGACCAAACGCAGAAACCTGAAACTTTCCAGGTTTTTTCCTTATTTCTGAAGCTCTGGAAAAAATATCCATTTTTTACccgttttatattttatacccATATTTCTTATGGGCTAGAGACAAAAAAGagcttttatacacacacacacacacacacacacacacattaattattgtgttgttttattgcttggatagttttgtgttgtttttgacttttttggaaattttttttacagtttttattatttttaattaaaggtcaaaaaatagatttttcatGGCATTAGCAGAAATTCAGTCCattaaaatatgaagaaaattaaaacacacttttacTGTGAGTATTTGCTTTACTTAATTTTACATAAACAAAATCAaagtattaaaaacaaatttatttagaTTTCTACTGTGTTctcatttatgttttaaaacttcttaaaaaagaattttatcTGAAATACTATCCAAGTTATGGcttaaggacaaaaaaaaaatcctaaaaatatGCCTTgattcatttgtatttgtttttttactatttttgtaAAAGATTAATTTGCACACtcggtttattattattttatttatagttgaTGTTGTAGTGTGGAAGTTTTTTTAAGGAACTTTGTGTGGACGCTTATTAacaacttttatttgtataattcataaaaaaagaaatagatagagtatacaaatatataatgtataaaaac
>XM_034310884.1
CTGCACAGAGAGCAGAGTCAGAGAGAGGTGTGTTTTTGGtcttatttaaacaaaactcTCAGCTCACAATCTTTCCTCCTGCTCTCAGTCCTGATTGTGACACACTGAAGAAtGTAAAGCACTcacttgctgttccaatactttcggaggggactgtgtgaTGGCCAGTGCAGAGGTGAAGCAGAGGCTGCAGAGGTCCATTTTAAGTCGTCAGAGTCTTAAACAAGCCGAGACTCAACGAGAGATGGCCCATATCTCTGAGCTAAATTTACAGCATGAGCATCCAAAcacacctccattttcacaacACAGAAGAAAGCAGCTGAGGAGAAccgCCTCTGAATTTGTTCTGAAGCCCAAAAACAAGAGCTCTTCATTCAGCAGCAAGAATCCTCttcacaactcgTTCCGCAGCAGCAGTAACCTCCTCGCATGTCAGTGCTCTCCACCTTCAGATCGGTCCGATCACACGTCGCTGCTGCAGGACTTCAGCGTACATACGCACCCTCAGATGGACAGGAATCCGAGCTTCATCGGGCCGTTGAAGATGTGGATCCAGGCTCCTGTCACTGTCCCACGTGAAGACATGTTACACCACGCCATCTTACTGGAACAAGTGTACATGGATACAGCCGTGTTCACCAATCCTCACCTGGCCGTCGTCCCGGCAGtgtgtatcagtgtgagcCAGCACAGGCCGATACAGAGATGTCATTCACAGCCTCTGATCCTTAGCAAACAGCCGAGGAGATTTCATCAGCATCACTGCTTACGATTACCAGGGAAACCctcacacacatattcaATCCCACAGAGCCTGTGTGTAATCCCCTGTGAACAGCACCACCCAGTGGTGGAGGAGAGAACAGCAGtgcaggagaaggagaaagttTGGTTTACGGCTGGAGAGGACTACAGCATGAGTCTCCAGAGCGAGTTCTGTGAAGAACCCAGAAGCAATGAGTCGGGTTGCTCATCACACCTGTCTCCCAGCGATAAGTGGCAGCGCAGACAAgctttcagaatgcacaacagaTCACATCAGCCAGTGGCACAcaccctctcctctcctcccgcCTACATCCTGCCTGACACTGCTGACTCCGCCCCTGACCACGCCCACAGCACAGGTGACAACATAGAGCACAGCACAGggctGGTGTATGACCCACATATGCTGAAGAAGGAGTGTATCTGTGGTAAGAGCAGCTGTGACCTTAAGCATGCTGGGAAAATTCCAAAGGTGTTAGTGAGACTGCATGAATGTGGAGTCAGTCATCAGTGTAAGtgGATCACAGGCAGCAAGTGCAGTGTGGAGATGCCTTATCAGACCAACACTTCAGCAGTGACGATGGCAGCAAACTGTGTAATAGAGCTCGTGCTGCTCGTGGCAGAGGGTCGGCTGAGGAACGGCTTTGCAATAGTACAACCACATGGACAAGATGCCTCACACTCATCCCCCTCTAAGTCAGTGAATAGTTTTAATCCAGTAGCACTTGCTGCTGAACAGCTCCGGAAAACACATAATAAGAGAAAGATTCTCATTCTTGACTGGGATTTTCATCACTGTGATATCACTCAGGAAATGTTCTACACAGACCCGAACGTTCTCCACATCTCTCTGCATCGCGGCGACGGCATGCCCAGCGCTGTGAGAGGACGAGCTGATGAAGTGGGCTCGGGTGAAGGAGAAGGTTTTAACGTCAACGTGGAATGGTTATGTGGAATGGACCCACCCATAGGAGACGCAGAATACTTGGCAGCATTTAGGACGGTGATCAAGCCGATTGCTCAGCAGTTCTCCCCTGACGTCATCCTGATTTCCACCGGGTTTAACACCGTCGACGGTCATCCATCGTCTCAGGGAGGACTGAGAGTATCCGCGAAATgtttTGGGCTCCTCACTCAGAACCTGATGGAGCTCTCCGGAGGTCGCGTGGTCGTGGTGTTAGAGCGAGATCATGACGTTACGGCCGTGTGTGAGGCGTCTAAGGCGTGTATTAACGCTCTGTTAGACAACAAGgttgcGTCTCTGTCGGAGGACGTCCTGATGAAGAAGCCGTGTGCTGCAGCAGTTCATTCTCTATACAGAGTTCTGCAGATccacaGTCAGTACTGGTCATCTGTGAGAGCTCTGACACACACCGTAGGTGAGTCGTGGTTACAGGCTGAGAGGAAACATTCAGCGCACACGGACACGGCCTCAGCCCTCGCCTTGCTCAGCATGACCACCCCGAATTACACCGGGTTCGGTTGTGGAGGAACCGAGCCGGTGGAGCACGACGAGGACGAGGACGGAACTCCAACGTGACCTGATCGAGGCGAGACGAGACAACGGACCAAACGCAGAAACCTGAAACTTTCCAGGTTTTTTCCTTATTTCTGAAGCTCTGGAAAAAATATCCATTTTTTACccgttttatattttatacccATATTTCTTATGGGCTAGAGACAAAAAAGagcttttatacacacacacacacacacacacacacacattaattattgtgttgttttattgcttggatagttttgtgttgtttttgacttttttggaaattttttttacagtttttattatttttaattaaaggtcaaaaaatagatttttcatGGCATTAGCAGAAATTCAGTCCattaaaatatgaagaaaattaaaacacacttttacTGTGAGTATTTGCTTTACTTAATTTTACATAAACAAAATCAaagtattaaaaacaaatttatttagaTTTCTACTGTGTTctcatttatgttttaaaacttcttaaaaaagaattttatcTGAAATACTATCCAAGTTATGGcttaaggacaaaaaaaaaatcctaaaaatatGCCTTgattcatttgtatttgtttttttactatttttgtaAAAGATTAATTTGCACACtcggtttattattattttatttatagttgaTGTTGTAGTGTGGAAGTTTTTTTAAGGAACTTTGTGTGGACGCTTATTAacaacttttatttgtataattcataaaaaaagaaatagatagagtatacaaatatataatgtataaaaac

Function

NR:

description
PREDICTED: histone deacetylase 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310874.1 True 3057 mRNA 0.46 21 1009882 1028176
XM_034310878.1 False 3021 mRNA 0.45 19 1012901 1028176
XM_034310884.1 False 3054 mRNA 0.46 21 1009882 1028176

Neighbor

gene id symbol gene type direction distance location
tns2b LOC108272206,LOC105895952 coding upstream 50580 936227 ~ 959302 (+)
eif4bb eif4bb,LOC108272209,LOC108441049,LOC107733597 coding upstream 79114 917137 ~ 930768 (+)
LOC113545883 LOC108272230,LOC108272229 coding upstream 101062 906382 ~ 908820 (+)
LOC113545878 LOC108272230,LOC108272229 coding upstream 107539 899681 ~ 902343 (+)
LOC113545879 LOC108272226 coding upstream 114190 888653 ~ 895692 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151 coding downstream 267367 1295543 ~ 1341164 (+)
nipa1 nipa1 coding downstream 651761 1679937 ~ 1686316 (+)
nipa2 nipa2 coding downstream 659380 1687556 ~ 1694753 (+)
chst7 chst7,LOC107582727 coding downstream 715983 1744159 ~ 1754224 (+)
rp2 rp2,LOC107753404,LOC107685300,LOC107711097 coding downstream 801837 1830013 ~ 1841202 (+)
G19655 NA non-coding upstream 51518 957501 ~ 958364 (+)
G19654 NA non-coding upstream 51784 957012 ~ 958098 (+)
G19645 NA non-coding upstream 95202 914474 ~ 914680 (+)
G19444 NA non-coding upstream 161963 847280 ~ 847919 (+)
G19418 NA non-coding upstream 239677 759373 ~ 770205 (+)
G19648 NA non-coding downstream 667 1028843 ~ 1079801 (+)
G19670 NA non-coding downstream 11424 1039600 ~ 1041411 (+)
G19693 NA non-coding downstream 111702 1139878 ~ 1142132 (+)
G19996 herc2,LOC105895139,LOC106521848 non-coding downstream 588591 1616767 ~ 1617128 (+)
G20004 herc2 non-coding downstream 598448 1626624 ~ 1627077 (+)
vdrb vdrb,LOC108272216,LOC107585146,LOC107673565,LOC108441087,LOC107667372,LOC107582718,LOC107733590,LOC107711077 other upstream 7424 969957 ~ 1002458 (+)
G19395 LOC108272241 other upstream 397156 609199 ~ 612726 (+)
LOC113545899 LOC108272223 other upstream 451413 554222 ~ 558469 (+)
LOC113545897 NA other upstream 735954 260984 ~ 273928 (+)
itgb7 LOC108271744 other upstream 778976 208913 ~ 230906 (+)
cnga3a cnga3a,LOC108271559,LOC107733584,LOC108441138 other downstream 54260 1082436 ~ 1095954 (+)
LOC113545932 gabrg3 other downstream 323577 1351753 ~ 1488779 (+)
opa1 opa1,LOC107585173,LOC107722677,LOC107582739,LOC107711112,LOC107673572 other downstream 1358523 2386699 ~ 2452689 (+)
vhl vhl other downstream 1705936 2734112 ~ 2737993 (+)
col7a1 col7a1 other downstream 1803977 2832153 ~ 2946856 (+)

Expression


Co-expression Network