si:ch211-161c3.5 (LOC108272269,LOC107587572)


Basic Information

Item Value
gene id si:ch211-161c3.5
gene name LOC108272269,LOC107587572
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9050896 ~ 9063498 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926274.2
ACTAACATACTACACAGTATGTGAAAACAGTATGTCAGCATAGGTAGCGCACTAGTTTGACATACTTCGTAGAGTGCTAGTATACGTTTTCAGACGTAGCCTGTTGTCAAGGTTTGTAGCATCCATATAACGGCCTATGTTTATTCAGGAATATAGAGGAATGGGAAGAGAGAAGTATTAGGCAGTGTTGAGTAAAGGAAAATTAGGAACAAGACGACAGGTTCTGTTCAAAAGctgttttgtatttaatttttatagctTTGCTGAGCACTTTTTTCCTTGTTGAGGTGTAACGGAGACAGAAGACAGTCCACTTTTTCTTACTTTCAGCGCTGTGTTGTCATATAATCAACCCTGGCTGCTGTTCTTTATGATAAGGATGATGAATGTAATGGCTGAGGAGTGACCCAAACAACCATCTCCATCACCACCAGCTCCTCTATCCCAGGGCCATGTCTCTGACAACTGTCAAACCTAATTTCTTCAGTCCATCCTTAGAGTATACTCCAGTCTCTGTCCGTACACTTGTCTCAACTCTTTCCAGCCCTGTCCTCATCAGTTCAGTGGAGAGCAGGACAGAACAGGATAATGCTACGTATAGAGCCACCTTCTCCACTGTCACTGTACCAGCAAATGAGACAGGCTTCAACTCCACGCGGCTCCCCATGGCATCAGTGGATGGTGCTGGCATGGGCATGGTCCTCATGCCCTTTGGCATAATCAGCATTGTTGGGTTGGCTGTTGTCGTGATGCTGTAtataaggaaaaagaaaagACTGGAGAAGCTAAGGCACCAGCTGATGCCCATGTATAACTTTGACCCAGCCGAGGAGCAGGACGACCTGGAACAGGAACTTCTGGACCACGGCCGAGACGGCAGCCCAGCAGGACCAAATTCCAAAACGCTGACATCAGGTCAGGGTGGCGCTCAAGTGGCGAGTCGACTGGTCTTTACGGACGTTGCTGATGCCATAAATGTATGACATCACTCCTGCAGCATAAATGAAGATTTCAGAAATCTCCAGGGACATCATGTAGACAACGGGAATTTTCCAGCTTCATATTTTCACACTAGACTGGAATCAGACATTGATTTAGCAAATGTCTGTAGACTATAAGGGAAGTTTCAAATGATCTCTAGGAGACTGGTAAGATTAGGTTGCATTcgctgtattaaaaaaaaggaaatggcatttctgtgcattttatataaaagcttatttaatttcatttctaaTGATCCCTTTTAAATGGATTGTTTCAGACCGGGTTTAATCCATCATAGTCAcggatatatacagtatatgtctaGATGTGCATTTTtagaagtgtttattaaagaaatttcATAGTAGTTGCTTTTAATCTTTGTTCATGAATAGTAATAGCATGCATTTTTAGATaccacatgtacacacatcactgcatcacacaGTTAAAAGGCTCCAGTTACTcgtattcattttattattcttaacCTTGTTTCTGATAAATTCAAattagtttgtgtttatttgtctagctcttttaacagtagacattgtAGCAAAACAGTGCTACATAAATAAAGGTGTAGATTAATGAGGTGACAGTGGaaaggaaaactccctgagacaacatgaggaagaaaccttgagaggaaccagagtcTTCTGCGTGATgccggatagtgggattataaatcattattgttCTTCAACTGTACATTATAAAATCAATACTATGTATGTTGAAAGGATGGTAAACAtaagcatattgtgaataatatTCATGGAATAAGCACAGGACAGTTTTTTTATGGTTACAACAGCAGTTCCTAGGTACAAGTTTTAGAAGTACAGGTGATGGATAGTGGTTTTGTGATTAACCATGAAGTCTTCTCACTAAAGCTGGGAAATTGTAAGGCTCCTTTTCTTTACAGTTAGGGGACATTCTTTCTTCAAGTGCATAAAAACATAGTAGAAGTGGTTGGGAATTTGATGCACATTTTCTCTACCACTGCCATAGCTCAAACTACAGCTTCTTGAACCTTTACTTCTTATTTCTCTCCTGTTAGCATCATCTCTCCTGTTAGCATCATGTGTTCtacaatgtaaaaacatttttaaaaaagttattttgcCACAGCCTTACCCAAAGCCTAAATACACaatttttaactgtatttatagaaagagagaggtgaTTTATATTCTATGTAGGATCTCAAAGACAACAGGTATGACAAAGGGAGACAGGTTATTTTAACCTGAAAAGAATCACAACTGAGATCTGAAGTTTTCTACAGAACTCAGTTTCCTCAAAAGCTTCTGCGAAACTGCGTCAGTGCTACTGAAGCAGGCCTTGATGAATTTCAAAGTAACCGTAATGTCAGTTCATGGCTCTATTTAAAACAGggtgaatgaaaaagaaaaattaaagagCCTCTAAGAGTACTAACATGATAGTTTAACAAACAATGCTGTGTATGTAGTTATGTACTACCATTACAAAGCAACTTTTGTCTTCAAACCAAGTTATTCAAAATGAATAGAAATTATGGGGCATTCTCTTTGTGTTTCTAGTAGATTTTTGTGCACTTGCCCTGAAATgtgcttccttccttctcttaCTCCAGAGTGTGGGTGCTGTGTTTGCTTGCTTCCTTGCACAATAAAGCGTGTAATGATTATTGTTTCAAACAGATTAACTTTTTTGAAATTTCTCTCTagtgaggcagagagaaaagtcATTATATGTCATGTATGTCTATAtaagtactctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctactatGGAGTAATTGTCTGTGGCAGCATTCCACACTCTCCAAAACCAGCAGCATTAAAGAAAATTTGTAACGTGTGTGAACATGAccata

Function

NR:

description
PREDICTED: uncharacterized protein C3orf18 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926274.2 True 2894 mRNA 0.39 5 9050896 9063498

Neighbor

gene id symbol gene type direction distance location
LOC113535004 calml6 coding upstream 397 9047050 ~ 9050499 (+)
uba7 LOC108272095 coding upstream 202951 8798743 ~ 8847945 (+)
sema3fa sema3fa,sema3f,LOC108272104,LOC107750243,LOC107713499,LOC107657805 coding upstream 254210 8744646 ~ 8796686 (+)
LOC113536005 LOC108271945 coding upstream 359353 8672584 ~ 8691543 (+)
camkva camkva,LOC108272257,LOC108413662,LOC107666999,LOC107584462,LOC107552645,LOC107658068 coding upstream 380349 8633234 ~ 8670547 (+)
abhd14b abhd14b,LOC107580032 coding downstream 25236 9088734 ~ 9095742 (+)
nudt3b nudt3,LOC108271898 coding downstream 391178 9454676 ~ 9467790 (+)
pacsin1b pacsin1,LOC108271966 coding downstream 410041 9473539 ~ 9500167 (+)
anks1ab LOC108272262,LOC108433676,LOC107595407,LOC107666177 coding downstream 477110 9540608 ~ 9570519 (+)
LOC113533334 tulp1,LOC108441591,LOC107587584,LOC107744370 coding downstream 565077 9628575 ~ 9636737 (+)
G23863 NA non-coding upstream 21526 9028613 ~ 9029370 (+)
G23846 NA non-coding upstream 40148 9008431 ~ 9010748 (+)
G23844 LOC108271979,LOC108433690 non-coding upstream 75657 8973193 ~ 8975239 (+)
G23815 NA non-coding upstream 189113 8860371 ~ 8861783 (+)
G23740 NA non-coding upstream 341628 8709066 ~ 8709268 (+)
G23894 LOC108271986 non-coding downstream 184175 9247673 ~ 9303537 (+)
G23934 NA non-coding downstream 254816 9318314 ~ 9319050 (+)
LOC117596200 NA non-coding downstream 273645 9337143 ~ 9357998 (+)
G24108 NA non-coding downstream 363359 9426857 ~ 9428217 (+)
G24118 NA non-coding downstream 370477 9433975 ~ 9434211 (+)
cysltr3 LOC108271499 other upstream 45955 8996934 ~ 9004941 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other upstream 611555 8407805 ~ 8439341 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other upstream 1120339 7905598 ~ 7930557 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 2823735 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 3000991 6036714 ~ 6049905 (+)
hmga1b NA other downstream 387427 9450925 ~ 9454462 (+)
LOC113532547 LOC108271588 other downstream 528443 9591941 ~ 9603506 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other downstream 811210 9874708 ~ 9923165 (+)
manbal manbal other downstream 874867 9938365 ~ 9941187 (+)
G24500 NA other downstream 1134468 10197966 ~ 10198455 (+)

Expression


Co-expression Network