hmga1b


Basic Information

Item Value
gene id hmga1b
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9450925 ~ 9454462 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU28587
agccccgccccctttatATTCTTTCAGCCTGAGACTCCTGCTGGCGCGCGAttggcttattattattatagcgcTTATTCGCAATACGCGCTTCTCAAATCGCTCCACTTCAGAAACACACAGCTGATTTCCTTCATCTACGCATGCGGTGACGCTGGAAAATGAGTGACTCCGAGAAGCAGACAATTTCTGTGAAGGAAAAGGACGGAGTGGAGAAGAGAGGACGAGGAAGACCGAGAAAACATCCAAAGGAGTCCAGTGGATCTCCGGTTCCGAAAAGACCGAGAGGGCGGCCAAAGGGCAGCAAAAATAAAGGACCTTCCAAGAAAAAAGCGGGATCATCTTCAGAAAAGAAGCTAAAGGGGAAGCCCAAGAAGGAGGAAAAGGAGGCATCTCAGGAGTCctctgaggaagaagaggaggatgaagatgaggaacAGTAACTACCTCATCCTCGGCACTACCTCATAATATGACACAGCCTGGCACCACTTACTAATCTACAGCCTCTAACAACGGGATGTCGTCCGCTCAACCACCTCTGTGGGACTGACATAAATATCATGTCTATAACAATCAGTTACAtgtataaacaaaaaagaaaaaaaaaagtggaataaTTTTAGAATCTGTGAATTAGGCTGCATATAAGTGTTTAGTCCATTAATGGTGCTTACTTGGtgcttttctatttttgttttggtttgcttTTTATGTACTTTTTGTGACGTGGAAGGTCAGGGGGGATATAGAATTAGAAGAAGAAAACTGTTCTGACCGTGATGTGTAGTGGTCCTATAGTTTTAGTGTAGGGCTTTCTGCTTAACTGcagctgaattattattatttttttttttttaaaaaacacccCCTGCACTGACTAGATTTTATCTTATTAGATTGCCTTTATTATATATGTTGATGCGTGAATATTCACCATTTGTTGAAGGCtaggtgtgtgtattttgcaaGATAAACAGATCATGCGTTTAGATTTGAATACACCATTTTCAGTCTTTCTCACTCTGGTGTAATAGTTGAGTAGGTGATATACGTAGATGTGTCTGATTCTCATTGCAAGTACATTCCAGTAGCATTTTTAACACACTTCTGACTAATTTATGTGGACTGTTcctcatacatatatatatttttttttcttttcatcgaCAGTTTTGCCTCTTTTACTTAACTTTTACCAACAGGTCACTTTTCTAGGTCAGAGAAAAGTACACACAGGCAGATAAGTCTTTAGCTCTGgtcagcattaaaaaaaaaaaatactttacagtTGTAAATTTAAGGATCCACCCAAATCCTTCTGGGAGTTTACAGAGTACACCTGTGAAATAATGCACACTTGAGCAGCTATACCTCAGTACCATGGCTTGTGCTTGTGACAGGTTTGCATATATTGTCAGATCAGCTTACATGAGACTGTGTCATTTGGATAACTTTAGAATAGTCagaatgactgtttttactCTGCATCACACATCCCATCTGTCCACATTCTCTGAACCATAGCAACAATATGCATCAGCCACCTCAGGAATTACAGTACATAGACAGCAGGCGACAAGCCAAGTAGTGTTCAGATAGCACTGATAACTTCTGTATAGAATGTGTTCATCATTTCTGTGGAAAACAACCTTTGCTCTGTACCTATTTTTAATGCAGCTGAGGAATTGTCTACAAGCTCTTTTAGGCTTATACCACGTTTGTTGATGCCGCAAATACCTATTTATTTCACGTTTAATTGAGAATTCAGTTGTATCTGTGTAGCATGTTGTGTTGTTAATAAAGTATA
>TU28588
agccccgccccctttatATTCTTTCAGCCTGAGACTCCTGCTGGCGCGCGAttggcttattattattatagcgcTTATTCGCAATACGCGCTTCTCAAATCGCTCCACTTCAGAAACACACAGCTGATTTCCTTCATCTACGCATGCGGTAAGTTCTTGCATGGCTTTAGCCAAGTTTTGGTGGTAGCTCCATCGAATAGCCATTGTCCTTTAATTCAATCGGGAGACATTGTGCGCTGGAGGTGGGGCTACTCGCagatatacaatacacacagctttatatttttatttggttCGCCTAGAAACCCGAAGGCTCGAGCGCTGCATGTGACGCTGGAAAATGAGTGACTCCGAGAAGCAGACAATTTCTGTGAAGGAAAAGGACGGAGTGGAGAAGAGAGGACGAGGAAGACCGAGAAAACATCCAAAGGAGTCCAGTGGATCTCCGGTTCCGAAAAGACCGAGAGGGCGGCCAAAGGGCAGCAAAAATAAAGGACCTTCCAAGAAAAAAGCGGGATCATCTTCAGAAAAGAAGCTAAAGGGGAAGCCCAAGAAGGAGGAAAAGGAGGCATCTCAGGAGTCctctgaggaagaagaggaggatgaagatgaggaacAGTAACTACCTCATCCTCGGCACTACCTCATAATATGACACAGCCTGGCACCACTTACTAATCTACAGCCTCTAACAACGGGATGTCGTCCGCTCAACCACCTCTGTGGGACTGACATAAATATCATGTCTATAACAATCAGTTACAtgtataaacaaaaaagaaaaaaaaaagtggaataaTTTTAGAATCTGTGAATTAGGCTGCATATAAGTGTTTAGTCCATTAATGGTGCTTACTTGGtgcttttctatttttgttttggtttgcttTTTATGTACTTTTTGTGACGTGGAAGGTCAGGGGGGATATAGAATTAGAAGAAGAAAACTGTTCTGACCGTGATGTGTAGTGGTCCTATAGTTTTAGTGTAGGGCTTTCTGCTTAACTGcagctgaattattattatttttttttttttaaaaaacacccCCTGCACTGACTAGATTTTATCTTATTAGATTGCCTTTATTATATATGTTGATGCGTGAATATTCACCATTTGTTGAAGGCtaggtgtgtgtattttgcaaGATAAACAGATCATGCGTTTAGATTTGAATACACCATTTTCAGTCTTTCTCACTCTGGTGTAATAGTTGAGTAGGTGATATACGTAGATGTGTCTGATTCTCATTGCAAGTACATTCCAGTAGCATTTTTAACACACTTCTGACTAATTTATGTGGACTGTTcctcatacatatatatatttttttttcttttcatcgaCAGTTTTGCCTCTTTTACTTAACTTTTACCAACAGGTCACTTTTCTAGGTCAGAGAAAAGTACACACAGGCAGATAAGTCTTTAGCTCTGgtcagcattaaaaaaaaaaaatactttacagtTGTAAATTTAAGGATCCACCCAAATCCTTCTGGGAGTTTACAGAGTACACCTGTGAAATAATGCACACTTGAGCAGCTATACCTCAGTACCATGGCTTGTGCTTGTGACAGGTTTGCATATATTGTCAGATCAGCTTACATGAGACTGTGTCATTTGGATAACTTTAGAATAGTCagaatgactgtttttactCTGCATCACACATCCCATCTGTCCACATTCTCTGAACCATAGCAACAATATGCATCAGCCACCTCAGGAATTACAGTACATAGACAGCAGGCGACAAGCCAAGTAGTGTTCAGATAGCACTGATAACTTCTGTATAGAATGTGTTCATCATTTCTGTGGAAAACAACCTTTGCTCTGTACCTATTTTTAATGCAGCTGAGGAATTGTCTACAAGCTCTTTTAGGCTTATACCACGTTTGTTGATGCCGCAAATACCTATTTATTTCACGTTTAATTGAGAATTCAGTTGTATCTGTGTAGCATGTTGTGTTGTTAATAAAGTATA
>XM_026924732.2
cccctttatATTCTTTCAGCCTGAGACTCCTGCTGGCGCGCGAttggcttattattattatagcgcTTATTCGCAATACGCGCTTCTCAAATCGCTCCACTTCAGAAACACACAGCTGATTTCCTTCATCTACGCATGCGGTGACGCTGGAAAATGAGTGACTCCGAGAAGCAGACAATTTCTGTGAAGGAAAAGGACGGAGTGGAGAAGAGAGGACGAGGAAGACCGAGAAAACATCCAAAGGAGTCCAGTGGATCTCCGGTTCCGAAAAGACCGAGAGGGCGGCCAAAGGGCAGCAAAAATAAAGGACCTTCCAAGAAAAAAGCGGGATCATCTTCAGAAAAGAAGCTAAAGGGGAAGCCCAAGAAGGAGGAAAAGGAGGCATCTCAGGAGTCctctgaggaagaagaggaggatgaagatgaggaacAGTAACTACCTCATCCTCGGCACTACCTCATAATATGACACAGCCTGGCACCACTTACTAATCTACAGCCTCTAACAACGGGATGTCGTCCGCTCAACCACCTCTGTGGGACTGACATAAATATCATGTCTATAACAATCAGTTACAtgtataaacaaaaaagaaaaaaaaaagtggaataaTTTTAGAATCTGTGAATTAGGCTGCATATAAGTGTTTAGTCCATTAATGGTGCTTACTTGGtgcttttctatttttgttttggtttgcttTTTATGTACTTTTTGTGACGTGGAAGGTCAGGGGGGATATAGAATTAGAAGAAGAAAACTGTTCTGACCGTGATGTGTAGTGGTCCTATAGTTTTAGTGTAGGGCTTTCTGCTTAACTGcagctgaattattattatttttttttttttaaaaaacacccCCTGCACTGACTAGATTTTATCTTATTAGATTGCCTTTATTATATATGTTGATGCGTGAATATTCACCATTTGTTGAA
>XM_026924814.2
GGCTTTAGCCAAGTTTTGGTGGTAGCTCCATCGAATAGCCATTGTCCTTTAATTCAATCGGGAGACATTGTGCGCTGGAGGTGGGGCTACTCGCagatatacaatacacacagctttatatttttatttggttCGCCTAGAAACCCGAAGGCTCGAGCGCTGCATGTGACGCTGGAAAATGAGTGACTCCGAGAAGCAGACAATTTCTGTGAAGGAAAAGGACGGAGTGGAGAAGAGAGGACGAGGAAGACCGAGAAAACATCCAAAGGAGTCCAGTGGATCTCCGGTTCCGAAAAGACCGAGAGGGCGGCCAAAGGGCAGCAAAAATAAAGGACCTTCCAAGAAAAAAGCGGGATCATCTTCAGAAAAGAAGCTAAAGGGGAAGCCCAAGAAGGAGGAAAAGGAGGCATCTCAGGAGTCctctgaggaagaagaggaggatgaagatgaggaacAGTAACTACCTCATCCTCGGCACTACCTCATAATATGACACAGCCTGGCACCACTTACTAATCTACAGCCTCTAACAACGGGATGTCGTCCGCTCAACCACCTCTGTGGGACTGACATAAATATCATGTCTATAACAATCAGTTACAtgtataaacaaaaaagaaaaaaaaaagtggaataaTTTTAGAATCTGTGAATTAGGCTGCATATAAGTGTTTAGTCCATTAATGGTGCTTACTTGGtgcttttctatttttgttttggtttgcttTTTATGTACTTTTTGTGACGTGGAAGGTCAGGGGGGATATAGAATTAGAAGAAGAAAACTGTTCTGACCGTGATGTGTAGTGGTCCTATAGTTTTAGTGTAGGGCTTTCTGCTTAACTGcagctgaattattattatttttttttttttaaaaaacacccCCTGCACTGACTAGATTTTATCTTATTAGATTGCCTTTATTATATATGTTGATGCGTGAATATTCACCATTTGTTGAA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU28587 False 1810 TUCP 0.39 5 9450925 9454462
TU28588 True 1989 TUCP 0.40 5 9450925 9454462
XM_026924732.2 False 940 mRNA 0.41 5 9450933 9453600
XM_026924814.2 False 965 mRNA 0.42 5 9451087 9453600

Neighbor

gene id symbol gene type direction distance location
abhd14b abhd14b,LOC107580032 coding upstream 355183 9088734 ~ 9095742 (+)
si:ch211-161c3.5 LOC108272269,LOC107587572 coding upstream 387427 9050896 ~ 9063498 (+)
LOC113535004 calml6 coding upstream 400426 9047050 ~ 9050499 (+)
uba7 LOC108272095 coding upstream 602980 8798743 ~ 8847945 (+)
sema3fa sema3fa,sema3f,LOC108272104,LOC107750243,LOC107713499,LOC107657805 coding upstream 654239 8744646 ~ 8796686 (+)
nudt3b nudt3,LOC108271898 coding downstream 214 9454676 ~ 9467790 (+)
pacsin1b pacsin1,LOC108271966 coding downstream 19077 9473539 ~ 9500167 (+)
anks1ab LOC108272262,LOC108433676,LOC107595407,LOC107666177 coding downstream 86146 9540608 ~ 9570519 (+)
LOC113533334 tulp1,LOC108441591,LOC107587584,LOC107744370 coding downstream 174113 9628575 ~ 9636737 (+)
tead3b tead3,LOC108441590,LOC107665997,LOC105907572 coding downstream 184643 9639105 ~ 9672645 (+)
G24118 NA non-coding upstream 16714 9433975 ~ 9434211 (+)
G24108 NA non-coding upstream 22708 9426857 ~ 9428217 (+)
LOC117596200 NA non-coding upstream 92927 9337143 ~ 9357998 (+)
G23934 NA non-coding upstream 131875 9318314 ~ 9319050 (+)
G23894 LOC108271986 non-coding upstream 147388 9247673 ~ 9303537 (+)
G24114 LOC106567293 non-coding downstream 14082 9468544 ~ 9471574 (+)
G24137 NA non-coding downstream 64204 9518666 ~ 9518987 (+)
G24159 NA non-coding downstream 133835 9588297 ~ 9588508 (+)
G24160 NA non-coding downstream 134856 9589318 ~ 9589585 (+)
G24162 NA non-coding downstream 136966 9591428 ~ 9591646 (+)
cysltr3 LOC108271499 other upstream 445984 8996934 ~ 9004941 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other upstream 1011584 8407805 ~ 8439341 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other upstream 1520368 7905598 ~ 7930557 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 3223764 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 3401020 6036714 ~ 6049905 (+)
LOC113532547 LOC108271588 other downstream 137479 9591941 ~ 9603506 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other downstream 420246 9874708 ~ 9923165 (+)
manbal manbal other downstream 483903 9938365 ~ 9941187 (+)
G24500 NA other downstream 743504 10197966 ~ 10198455 (+)
G25029 NA other downstream 1451738 10906200 ~ 10908572 (+)

Expression


Co-expression Network