LOC117596200


Basic Information

Item Value
gene id LOC117596200
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9337143 ~ 9357998 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577370.1
AAGCACATGGTTCACAAACACTCAACTACCTAGGCAAGACTTCTAATttttttttccccccaaatccacacaactgaacatctgCTACGTGTCTACGACCAATCTGATGTCTTGACACCTACCAGCTGTGAAGGAGACATTAGGGGAGAGTGAAAGCAAACATCAGGAGAATGCTGCTGGAACATGTGCAGCAGTGTTTCTCTAAGTGCAgcatctgggggaaaaaagGAATGTGTGCAAAGGATTGTGGGTGATTGGAAGATACACCGATGCTTCAAAATCTGCCAAAGGAAGGCCACGAAATGAATagaaaca

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577370.1 True 315 lncRNA 0.44 3 9337143 9357998

Neighbor

gene id symbol gene type direction distance location
abhd14b abhd14b,LOC107580032 coding upstream 241401 9088734 ~ 9095742 (+)
si:ch211-161c3.5 LOC108272269,LOC107587572 coding upstream 273645 9050896 ~ 9063498 (+)
LOC113535004 calml6 coding upstream 286644 9047050 ~ 9050499 (+)
uba7 LOC108272095 coding upstream 489198 8798743 ~ 8847945 (+)
sema3fa sema3fa,sema3f,LOC108272104,LOC107750243,LOC107713499,LOC107657805 coding upstream 540457 8744646 ~ 8796686 (+)
nudt3b nudt3,LOC108271898 coding downstream 96678 9454676 ~ 9467790 (+)
pacsin1b pacsin1,LOC108271966 coding downstream 115541 9473539 ~ 9500167 (+)
anks1ab LOC108272262,LOC108433676,LOC107595407,LOC107666177 coding downstream 182610 9540608 ~ 9570519 (+)
LOC113533334 tulp1,LOC108441591,LOC107587584,LOC107744370 coding downstream 270577 9628575 ~ 9636737 (+)
tead3b tead3,LOC108441590,LOC107665997,LOC105907572 coding downstream 281107 9639105 ~ 9672645 (+)
G23934 NA non-coding upstream 18093 9318314 ~ 9319050 (+)
G23894 LOC108271986 non-coding upstream 33606 9247673 ~ 9303537 (+)
G23863 NA non-coding upstream 307773 9028613 ~ 9029370 (+)
G23846 NA non-coding upstream 326395 9008431 ~ 9010748 (+)
G23844 LOC108271979,LOC108433690 non-coding upstream 361904 8973193 ~ 8975239 (+)
G24108 NA non-coding downstream 68859 9426857 ~ 9428217 (+)
G24118 NA non-coding downstream 75977 9433975 ~ 9434211 (+)
G24114 LOC106567293 non-coding downstream 110546 9468544 ~ 9471574 (+)
G24137 NA non-coding downstream 160668 9518666 ~ 9518987 (+)
G24159 NA non-coding downstream 230299 9588297 ~ 9588508 (+)
cysltr3 LOC108271499 other upstream 332202 8996934 ~ 9004941 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other upstream 897802 8407805 ~ 8439341 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other upstream 1406586 7905598 ~ 7930557 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 3109982 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 3287238 6036714 ~ 6049905 (+)
hmga1b NA other downstream 92927 9450925 ~ 9454462 (+)
LOC113532547 LOC108271588 other downstream 233943 9591941 ~ 9603506 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other downstream 516710 9874708 ~ 9923165 (+)
manbal manbal other downstream 580367 9938365 ~ 9941187 (+)
G24500 NA other downstream 839968 10197966 ~ 10198455 (+)

Expression


Co-expression Network