LOC117599019


Basic Information

Item Value
gene id LOC117599019
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1493487 ~ 1495245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU258662
AAGGAGATCTTCATCAGGCATGATGTGCGTGGACCAGAACTGCTGCACCTAGAGAGGAGAGACCTGAAGGACCTGGGTGTAACGAAGGTCGGTCACATGAAGCGGATCCTGCAGGGAATCAGAGATCTGAATCGCAACAGCACGGCCAGCGAGGCTTAGACTCTCCAAgccaatcacacactcagaggGGCGGGACCAGTCTCAGCACAGCCAATCAGCTCAGAGGGACCAGTGCAGTGATGTCACTCAATTCACACCTCAGCACAGTGCCTTCATTTCACATTTGTGACATCAGCGTTGAGGAGAAATCTCTACTgccagcctgtgtgtgtgtgtgtgtgtgttagaatgagGAAGGGAGCAGTAAATAAGAGCCATCAGTAATCAAAGGGCTACAGATGtatgaaagtgaaatgaaaaactgtgctgttataattagccattagcaaaaaaaaaaaagaaaacaaatcaggAAATATTTTTCAGGAATCCACGCTGTCCGAATGTTAATAGCTTTATTACCTAACCACACTGCGTCATGACAATCAGTCAAGTAATGATCAAGTGATAAATATCCTGGTCCAACAGATACAACCACAatctacctgtgtgtgtgtgtgtgtgtgtgtgtaaaagagcgagagagatagagtgagtgagtgtgtgtgtgtgacctacactactcagcaaaaaaaataaatctcataTCAGAGTTGGGGTTTGTGTTAGCATCAGGATTTTAGGGTTAACATTGGGGTTTGATTCAGTGTTTGGTTTGAGTTGGCAGGAGCGTCGCTTAGTTAAACCAGATGTCATGAAGTTGTGCTTTCGACAGGCAAACTGTGCTGCGGTACGTCTTGCTGTGCAGGATGTTGAGGTCTGTAATTACACTCGACCTCTAACCAAACCCCATTTTGAGAAACGTGAACGTTGTGTCACGACTCGTGAACTCAAATCTGTCAGAAATTCACCGCAAGAACTGGCTTCTTATGTGGATTTTttcctaaacacacactgctgaacacaCATTAGCTGGAGTTTACAGTGTGACTCTCAACAACACATCAGCAACAGTCAGTATTATAACATGAGTGGCAGAGAAAGTACTTTTCCATCGAACACAGAACTTAGTTACAGAAGATCtgtgatgaaattaaatataaattataaattagtTCCAGCTGCGATCAGTGCAGTCGCTGAACGCTGTATTTAAACAGCCCGATTAACACAATTCTCATAaaacagagatgtgtgtgtatgagagagtgtgagagatcAGCCATATCATTATGTCCCgtagtgtttgtgttaaatatttattaagct
>XR_004579458.1
AAAGCAGGAGTGTCTGTAGCCAAGCTGAGGCAGCTCAGAGTATGGTGGCTTTGGAGATGTTTCAGAAGACATGGGACAGGTTGGTCTGTGGTGTAAATAATGACAGCATACAACAAAGACAGCATGAAACATGCAATAGAATCAGCGGCTAACAACACCAAAGACATTCAAAAAGCTAACGGGAGCGGTCAGTCATGCACAGTTGATCAGGtgtcaaaagaaaaatcacaaatgtATAAGAGTATAAGGAGATCTTCATCAGGCATGATGTGCGTGGACCAGAACTGCTGCACCTAGAGAGGAGAGACCTGAAGGACCTGGGTGTAACGAAGGTCGGTCACATGAAGCGGATCCTGCAGGGAATCAGAGATCTGAATCGCAACAGCACGGCCAGCGAGGCTTAGACTCTCCAAgccaatcacacactcagaggGGCGGGACCAGTCTCAGCACAGCCAATCAGCTCAGAGGGACCAGTGCAGTGATGTCACTCAATTCACACCTCAGCACAGTGCCTTCATTTCACATTTGTGACATCAGCGTTGAGGAGAAATCTCTACTgccagcctgtgtgtgtgtgtgtgtgtgttagaatgagGAAGGGAGCAGTAAATAAGAGCCATCAGTAATCAAAGGGCTACAGATGtatgaaagtgaaatgaaaaactgtgctgttataattagccattagcaaaaaaaaaaaagaaaacaaatcaggAAATATTTTTCAGGAATCCACGCTGTCCGAATGTTAATAGCTTTATTACCTAACCACACTGCGTCATGACAATCAGTCAAGTAATGATCAAGTGATAAATATCCTGGTCCAACAGATACAACCACAatctacctgtgtgtgtgtgtgtgtgtgtgtgtaaaagagcgagagagatagagtgagtgagtgtgtgtgtgtgacctacactactcagcaaaaaaaataaatctcataTCAGAGTTGGGGTTTGTGTTAGCATCAGGATTTTAGGGTTAACATTGGGGTTTGATTCAGTGTTTGGTTTGAGTTGGCAGGAGCGTCGCTTAGTTAAACCAGATGTCATGAAGTTGTGCTTTCGACAGGCAAACTGTGCTGCGGTACGTCTTGCTGTGCAGGATGTTGAGGTCTGTAATTACACTCGACCTCTAACCAAACCCCATTTTGAGAAACGTGAACGTTGTGTCACGACTCGTGAACTCAAATCTGTCAGAAATTCACCGCAAGAACTGGCTTCTTATGTGGATTTTttcctaaacacacactgctgaacacaCATTAGCTGGAGTTTACAGTGTGACTCTCAACAACACATCAGCAACAGTCAGTATTATAACATGAGTGGCAGAGAAAGTACTTTTCCATCGAACACAGAACTTAGTTACAGAAGATCtgtgatgaaattaaatataaattataaattagtTCCAGCTGCGATCAGTGCAGTCGCTGAACGCTGTATTTAAACAGCCCGATTAACACAATTCTCATAaaacagagatgtgtgtgtatgagagagtgtgagagatcAGCCATATCATTATGTCCCgtagtgtttgtgttaaatatttattaagctctgtgtgttttgtacaaAGCTCTGTATGAGAGTGTACATACATTCCTCATGTACAAACAGTCGGTATTAAACCAGTGCTGAGTTACAcagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258662 False 1329 lncRNA 0.43 2 1493732 1495153
XR_004579458.1 True 1666 lncRNA 0.43 2 1493487 1495245

Neighbor

gene id symbol gene type direction distance location
masp1 masp1 coding upstream 103945 1374758 ~ 1389542 (+)
sst1.1 sst1 coding upstream 136151 1356178 ~ 1357336 (+)
sst1.2 LOC108277696 coding upstream 153875 1337869 ~ 1339612 (+)
col4a3 NA coding upstream 159618 1290524 ~ 1333869 (+)
rhbdd1 rhbdd1 coding upstream 260528 1225187 ~ 1232959 (+)
LOC113544655 LOC108277713 coding downstream 2931 1498176 ~ 1503191 (+)
trnag-ucc_19 NA coding downstream 24703 1519948 ~ 1520019 (+)
trnag-ucc_20 NA coding downstream 25005 1520250 ~ 1520321 (+)
trnag-ucc_21 NA coding downstream 25494 1520739 ~ 1520810 (+)
LOC113544536 LOC108277717 coding downstream 47373 1542618 ~ 1545261 (+)
G217967 slc8a2,LOC108277508,LOC108433971,LOC103138329,LOC103358178 non-coding upstream 90952 1392182 ~ 1402535 (+)
G217931 NA non-coding upstream 275745 1198187 ~ 1217742 (+)
LOC113544667 NA non-coding upstream 295799 1196277 ~ 1197688 (+)
G217779 NA non-coding upstream 536839 883472 ~ 956648 (+)
G217778 NA non-coding upstream 537280 878345 ~ 956207 (+)
G218385 NA non-coding downstream 35589 1530834 ~ 1562271 (+)
G218384 NA non-coding downstream 56109 1551354 ~ 1565308 (+)
G218391 NA non-coding downstream 63052 1558297 ~ 1594488 (+)
G218383 NA non-coding downstream 72212 1567457 ~ 1568140 (+)
G218427 NA non-coding downstream 86152 1581397 ~ 1582793 (+)
LOC113544658 NA other upstream 456 1490294 ~ 1493031 (+)
nyap2a nyap2 other upstream 318740 1133034 ~ 1174747 (+)
trnav-aac_19 NA other upstream 379101 1114314 ~ 1114386 (+)
LOC117599076 NA other upstream 1103381 362243 ~ 390106 (+)
tmprss4a LOC108277792 other upstream 1165348 297497 ~ 328139 (+)
fgf12b fgf12,fgf12b,LOC108278337,LOC108411839,LOC107689585,LOC107549734 other downstream 31053 1526298 ~ 1671341 (+)
gria4a gria4a,LOC108278238,LOC107756206,LOC107566895,LOC107689577,LOC107560842,LOC107725765,LOC102308165,LOC107670112 other downstream 348112 1843357 ~ 1907243 (+)
G218476 NA other downstream 426526 1921771 ~ 1924284 (+)
LOC113544529 nox4 other downstream 542486 2037731 ~ 2052595 (+)
ctsc ctsc,LOC107735775 other downstream 631542 2126787 ~ 2132380 (+)

Expression


Co-expression Network