LOC113544655 (LOC108277713)


Basic Information

Item Value
gene id LOC113544655
gene name LOC108277713
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1498176 ~ 1503191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943594.2
GCGATCACAGAGCAAATATACGACTTTAAAGTCACCGAGCTGCTGAACCGTGTCATGATcaactgaggggaaaaaacataaatagaaATTTCTTACATGGAATTTTGACACGAAGAGTCCAAATGTCTGAATCTGTGTTCTGTTTGgtgatatttttattcagtaCATATACAATCAGTCTTCATTCAGCAGTGTTTATCAATCACAGGGATGCTGTACGGATCCTGAGGCACCGAAGAGCCAACTACTTCCTGGAGGAAGTCAAACCCGGAGATTTGGAGCGCGAGTGTTATGAGGAGATTTGCTCTAAAGAGGAAGCTGCAGAAATCTTTCAGAGCAGAGAGAAAACAACAGAGTTTTGGAATCGATACCGACgTCAGAGTCAGTGCCGTGAAAATGTGTGTCTTAATGGAGGGATTTGCACTGTAAGTGAAGGAGGttacgagtgtgtgtgtccaccaCGTTACACCGGAAAACAGTGTGAGAAAGaggtgTTTGAGTGTGAATACAAGAATGGTGGATGTTTGCATTTCTGCAGAGACTCACAACCGGTTGGCTCAAGTGTCACCTGCAGCTGTGCTGATGGATATGAACTGGAGGAGGACGGAAAAACCTGCAAAGTGACGgCAAAATTCCCATGTGGAAAACAATGGACTCAGGGCATTCTACAGCGCTCCTTATTGGATGATCTAAACCACACCCACATGGTGGAAAACCCCACCCACTACCCCACAAACAACAGTCTGTTCACGTCAAATCACACTACGGAGAACGCCACTCACCCACTGCACAACATATCTGCATCTGATGACTCAGATACCCGAATTGTAGGTGGCATGCTGCAGCGTCAGGGTGGAAGTCCGTGGCAGGTTCTGCTACGCAGGAAAGATGAGAATGGGTTCTGTGGAGGAACGCTGATCAATAATCGCTGGGTCGTTACAGCGGCTCACTGTCTACAGGAAACAcctgatcatgtgacacttgGCGACTTTGATAAATTTCGCCCTGATAACGGCGAGCAGAGAATCAAGGTGGAGAAAGCTGTCGTTCATCCTCATTTCCATGAGTACACATTTGACAGTGACATCGCTTTGCTGTACCTGGCTGAGCCGGTCGTGTTCAGTTCGGTCATCTCCCCTGCGTGCTTGCCCAACGCTCAGCTGGCCAATCAGCTGGAGCGACCAGGGGAGAACGGCCTAGTGAGTGGCTGGGGTGCAACCCGCTACCTCGGCCACTCTTCACGCTTTCTGCTGAAAGTATCACTTCCTGTAGTGGACCAGAACGAGTGTATGGATTCCACTGATCAGGTGATCACCGACAACATGTTCTGCGCCGGATTTCTGCAAACAGAGAAAGATGCATGCAGTGGTGACAGCGGTGGACCGTTCGTAGTGAACTACAGGGGAACGTGGTTCCTGACTGGAGTGGTGAGCTGGGGCGAGCAGTGCGCTGCCGAAGGAAAATACGGTGTGTACACGAGAATCAGCAACTTCCTCTACTGGATACAAGACGAGATGAAGAAACAGGAAAAGACAATCAGCAAGAACACCAAACAAACCAACACCAGTTAGACCTAGCTCTCTGATTCATATCTATTTTTAAGTGAGATTATATCCATACAGtgttataaaaacataattctGATAATATTATTGCCAGATGTTTGTAGTCACACTTTTTAATGAAAGCAATGTaggttttctgttttgtgcAATCAGTATATTCACTCTACTTTCTCTgatcttattttaaaattcaggaCCAGGAACCAGAAATAAAGATCACGTACATGGGAAACAAGTAGAAAATCAAAAATACTGAATTATGAGTGTAAGCagttattaaatcattttataccacagcgctgttgagtgcatgattctgattggtcagaaggtgtcgattaattttctacaacagcagctctgacaatagttttgTCTGCAAGCTTTTTATTAAAGCTCATTCGTAGCGACGCTCTGGTGGACGcaccacataaatggattttttaaatgtgtgtaatcgttgatatggtgacgtctTGTTTAAggagaatttattttaaaaaatttttactaggaattttacaaataatcaactctgcttCGTGTCGGGTCCCAGCACatcaccccattgttgattattttcctgtaacagcatattaaagtgttttattccttacagatAGCGTCTCTTAATATCCCAACATACATCAGCAGCAGTGGAATACCTTGTGTGATCACTTCTGATTTTTTCACATGGCAAACAGTGAAGCTTGTTGGAGTTGAAGAGGCTCTTATAATGTGAATATTGAGAAAAGGGCAGAACCAGCAGCAGTGTCACCAGCTTAGATGgtttataaatggataaagagcataaatggataaaaagtgttgttctggaataaataaaaagaggaaattattgacaaattgttgtggtataaaaggaataaaacactttgggacatgctgttatagctgttttattccttattagtTGTTAAAGCAGTTACTTCCATCAGCAAGATGttgaaattgcattttgttctgtttcatAAATGTCACGCGAACCGTTAAACGGGGTCCAGAGATGTTGGTCTCGcaatttattcaaatttgtaCTTTGTGTACTTTCTAATGAGCTAATATCTAGATCTGATGTGATTTCAAATTTTGCAGTTACaaattttttgcattaaaaatgacattatcaGCAATAGCTTGAGTAAAAAGTAggatgttaaaaatatttacatgaatttcagctttttttgcttccacaagtttgtgtaaaacctgacgaTCCATGTTAGAATccatcaaatccatcagagtgtcatctgaaaACGTGCTTCAATAGAAAAGATAAAACTCATTAAAATAGCTGATGTTT
>XM_034310352.1
AAGAGTCCAAATGTCTGAATCTGTGTTCTGTTTGgtgatatttttattcagtaCATATACAATCAGTCTTCATTCAGCAGTGTTTATCAATCACAGGGATGCTGTACGGATCCTGAGGCACCGAAGAGCCAACTACTTCCTGGAGGAAGTCAAACCCGGAGATTTGGAGCGCGAGTGTTATGAGGAGATTTGCTCTAAAGAGGAAGCTGCAGAAATCTTTCAGAGCAGAGAGAAAACAGTACagtgactgcagtACAGAGTTTTGGAATCGATACCGACgTCAGAGTCAGTGCCGTGAAAATGTGTGTCTTAATGGAGGGATTTGCACTGTAAGTGAAGGAGGttacgagtgtgtgtgtccaccaCGTTACACCGGAAAACAGTGTGAGAAAGaggtgTTTGAGTGTGAATACAAGAATGGTGGATGTTTGCATTTCTGCAGAGACTCACAACCGGTTGGCTCAAGTGTCACCTGCAGCTGTGCTGATGGATATGAACTGGAGGAGGACGGAAAAACCTGCAAAGTGACGgCAAAATTCCCATGTGGAAAACAATGGACTCAGGGCATTCTACAGCGCTCCTTATTGGATGATCTAAACCACACCCACATGGTGGAAAACCCCACCCACTACCCCACAAACAACAGTCTGTTCACGTCAAATCACACTACGGAGAACGCCACTCACCCACTGCACAACATATCTGCATCTGATGACTCAGATACCCGAATTGTAGGTGGCATGCTGCAGCGTCAGGGTGGAAGTCCGTGGCAGGTTCTGCTACGCAGGAAAGATGAGAATGGGTTCTGTGGAGGAACGCTGATCAATAATCGCTGGGTCGTTACAGCGGCTCACTGTCTACAGGAAACAcctgatcatgtgacacttgGCGACTTTGATAAATTTCGCCCTGATAACGGCGAGCAGAGAATCAAGGTGGAGAAAGCTGTCGTTCATCCTCATTTCCATGAGTACACATTTGACAGTGACATCGCTTTGCTGTACCTGGCTGAGCCGGTCGTGTTCAGTTCGGTCATCTCCCCTGCGTGCTTGCCCAACGCTCAGCTGGCCAATCAGCTGGAGCGACCAGGGGAGAACGGCCTAGTGAGTGGCTGGGGTGCAACCCGCTACCTCGGCCACTCTTCACGCTTTCTGCTGAAAGTATCACTTCCTGTAGTGGACCAGAACGAGTGTATGGATTCCACTGATCAGGTGATCACCGACAACATGTTCTGCGCCGGATTTCTGCAAACAGAGAAAGATGCATGCAGTGGTGACAGCGGTGGACCGTTCGTAGTGAACTACAGGGGAACGTGGTTCCTGACTGGAGTGGTGAGCTGGGGCGAGCAGTGCGCTGCCGAAGGAAAATACGGTGTGTACACGAGAATCAGCAACTTCCTCTACTGGATACAAGACGAGATGAAGAAACAGGAAAAGACAATCAGCAAGAACACCAAACAAACCAACACCAGTTAGACCTAGCTCTCTGATTCATATCTATTTTTAAGTGAGATTATATCCATACAGtgttataaaaacataattctGATAATATTATTGCCAGATGTTTGTAGTCACACTTTTTAATGAAAGCAATGTaggttttctgttttgtgcAATCAGTATATTCACTCTACTTTCTCTgatcttattttaaaattcaggaCCAGGAACCAGAAATAAAGATCACGTACATGGGAAACAAGTAGAAAATCAAAAATACTGAATTATGAGTGTAAGCagttattaaatcattttataccacagcgctgttgagtgcatgattctgattggtcagaaggtgtcgattaattttctacaacagcagctctgacaatagttttgTCTGCAAGCTTTTTATTAAAGCTCATTCGTAGCGACGCTCTGGTGGACGcaccacataaatggattttttaaatgtgtgtaatcgttgatatggtgacgtctTGTTTAAggagaatttattttaaaaaatttttactaggaattttacaaataatcaactctgcttCGTGTCGGGTCCCAGCACatcaccccattgttgattattttcctgtaacagcatattaaagtgttttattccttacagatAGCGTCTCTTAATATCCCAACATACATCAGCAGCAGTGGAATACCTTGTGTGATCACTTCTGATTTTTTCACATGGCAAACAGTGAAGCTTGTTGGAGTTGAAGAGGCTCTTATAATGTGAATATTGAGAAAAGGGCAGAACCAGCAGCAGTGTCACCAGCTTAGATGgtttataaatggataaagagcataaatggataaaaagtgttgttctggaataaataaaaagaggaaattattgacaaattgttgtggtataaaaggaataaaacactttgggacatgctgttatagctgttttattccttattagtTGTTAAAGCAGTTACTTCCATCAGCAAGATGttgaaattgcattttgttctgtttcatAAATGTCACGCGAACCGTTAAACGGGGTCCAGAGATGTTGGTCTCGcaatttattcaaatttgtaCTTTGTGTACTTTCTAATGAGCTAATATCTAGATCTGATGTGATTTCAAATTTTGCAGTTACaaattttttgcattaaaaatgacattatcaGCAATAGCTTGAGTAAAAAGTAggatgttaaaaatatttacatgaatttcagctttttttgcttccacaagtttgtgtaaaacctgacgaTCCATGTTAGAATccatcaaatccatcagagtgtcatctgaaaACGTGCTTCAATAGAAAAGATAAAACTCATTAAAATAGCTGATGTTT

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943594.2 True 2895 mRNA 0.42 9 1498176 1503191
XM_034310352.1 False 2799 mRNA 0.42 8 1498488 1503191

Neighbor

gene id symbol gene type direction distance location
masp1 masp1 coding upstream 108634 1374758 ~ 1389542 (+)
sst1.1 sst1 coding upstream 140840 1356178 ~ 1357336 (+)
sst1.2 LOC108277696 coding upstream 158564 1337869 ~ 1339612 (+)
col4a3 NA coding upstream 164307 1290524 ~ 1333869 (+)
rhbdd1 rhbdd1 coding upstream 265217 1225187 ~ 1232959 (+)
trnag-ucc_19 NA coding downstream 16757 1519948 ~ 1520019 (+)
trnag-ucc_20 NA coding downstream 17059 1520250 ~ 1520321 (+)
trnag-ucc_21 NA coding downstream 17548 1520739 ~ 1520810 (+)
LOC113544536 LOC108277717 coding downstream 39427 1542618 ~ 1545261 (+)
LOC113544533 NA coding downstream 133029 1636220 ~ 1652986 (+)
LOC117599019 NA non-coding upstream 2931 1493487 ~ 1495245 (+)
G217967 slc8a2,LOC108277508,LOC108433971,LOC103138329,LOC103358178 non-coding upstream 95641 1392182 ~ 1402535 (+)
G217931 NA non-coding upstream 280434 1198187 ~ 1217742 (+)
LOC113544667 NA non-coding upstream 300488 1196277 ~ 1197688 (+)
G217779 NA non-coding upstream 541528 883472 ~ 956648 (+)
G218385 NA non-coding downstream 27643 1530834 ~ 1562271 (+)
G218384 NA non-coding downstream 48163 1551354 ~ 1565308 (+)
G218391 NA non-coding downstream 55106 1558297 ~ 1594488 (+)
G218383 NA non-coding downstream 64266 1567457 ~ 1568140 (+)
G218427 NA non-coding downstream 78206 1581397 ~ 1582793 (+)
LOC113544658 NA other upstream 5145 1490294 ~ 1493031 (+)
nyap2a nyap2 other upstream 323429 1133034 ~ 1174747 (+)
trnav-aac_19 NA other upstream 383790 1114314 ~ 1114386 (+)
LOC117599076 NA other upstream 1108070 362243 ~ 390106 (+)
tmprss4a LOC108277792 other upstream 1170037 297497 ~ 328139 (+)
fgf12b fgf12,fgf12b,LOC108278337,LOC108411839,LOC107689585,LOC107549734 other downstream 23107 1526298 ~ 1671341 (+)
gria4a gria4a,LOC108278238,LOC107756206,LOC107566895,LOC107689577,LOC107560842,LOC107725765,LOC102308165,LOC107670112 other downstream 340166 1843357 ~ 1907243 (+)
G218476 NA other downstream 418580 1921771 ~ 1924284 (+)
LOC113544529 nox4 other downstream 534540 2037731 ~ 2052595 (+)
ctsc ctsc,LOC107735775 other downstream 623596 2126787 ~ 2132380 (+)

Expression


Co-expression Network