LOC113544533


Basic Information

Item Value
gene id LOC113544533
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1636220 ~ 1652986 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310620.1
ACGGGGTTTTCCGTAGGAGGAGCCTGACGATAAGGGCGCTACATTTCCGTTCACAACTCACACTGAGCCGAAGGAGCCAGGACCAGTCCGGATACGCGTGACACGGAACCGAAACGCGCGAGCCCGTGAATGGAGCGTGTTATCCGgaTGTTCGTCTCCGTTCTCCTCTTCCTTTGCTTAATGTGGGTGGTTCATGCCACCCTGTtagaagccccgcccactaGCCAATCAGgtcCACAATGTATGAACTGGGGTGTGTATGAAAGGGAAAAGGTGAGAGTGTATGAGGGTGAAGCGGGGAGAATACACTGCCCGCTCTTCTCACACCCGAAGCTGTATAACTACGCTCAGATCCAGAGCACGGGACACACACTGCTCTGGTACCGACATACACACGAGCTGGAGGAGCCGGTTGACCTGAGCCTCCCAACGTTCGTCAAACACAGAGACGCACTGTGGATACAGCCGGCCAGCATGCAGGACAGAGGAGAGTACATCTGCATTCtccgGAACATGTCATCGTGTGTGAAGATCGGTGTAAGACTGGATGTGGTTCCCCGTATGGGCGACTGTGACGACACACTGCACCGTAACTTCTCCGTCCCATTGCAGAGCAACTACACACTTCGCTGTCCCAACGTTCAGCACCTACCAAGCAAGACGTACAACGTCGTCTGGTACCatcactgTAAGAGTGACTTTTTCGACCGCATCTACAGGGATGTGCGCAATCACGAGCTGATGATCTATCAGATGTTCTATTTTTACGTCGGCCCTTACACCTGTGTCGTCACCTACCAGAGCAACGGACACACACTCAACTACACACATACCATCACCCTCAGAGCCGTGTccAACGGTGAGGCCAAAGAGCCAATGATTTGGAATCCAGCTGTTAATGATATTTACACTGTCAGTGTGGGCAAGGATGCAAAGTTGGCGTGCCGCGCGTTCCTGCCATACCTTAATGACGAGGAGCCGCAGGTGTGGTGGAGCATCAACAATAAGACGCTGGAAGAACTGTCAGAGCCTCGATACTCCTCACCTGCagtcagggtGCTGGAGGATGATTATGGTGACCGTAAAGTGGAGAGAATCTTGAATGTGTCACCGTTTAAAGAAGAAGATCTGCACAAAGAGTTTCGCTGCTCTGTTCAGAACAGCAAAGGATTTGACAGCAAAGTCGCCACGCTGAAGGAGgaggtgtacattCCCTCTGTAGAGCTCGGCTGTGGTCTCGGTGTGACTCTGGTTCTCGCGTTGTTGCTCTTTGTGTTGTATCGTGTGTTCTGGCTCGAGGTGCACCTTCTCTATCGCTCCTGGTTCGGCACGGACGAGAGagacacagatgGTAAGGAGTATGATGTGTACATCTCGTACGCACGCGAcactgaggaggaggagtttgTCATGGCAACGCTGAGGCGTGTGCTGGAGGCGGAGTTTGGATACACAGTGTGTATATTCGACAGAGACAGTCTGCCAGGAGGAAacCTGGCTGAGTCCGTCCTCAGGTGTATGCAGGCGAGTCGGCGGCTCGTGGTGGTGCTCAgtggagcatgtgtgtgtgagaagagcgTGCAGAAGCTGGAGTGCGGgctgtgtgtgtacctgcacgGCACGTGCGGTACTCCGCTCATCACGGTGCGTTGGCGACGCggtctcagggcaccatgctgTCGCGAGCTCACCGAACTGCGCCGGTGTGCCATCTGCGTGCACTGGCATGGTGCACAATCCCAACACCCCACCTCACGCTTCTGGAAACGACTGCGGCTTGCGCTCCCGGTCCGGCCACTCGCGCTCGGCCCGAGACTCATCGACAGCACGTCGTCACACTCCGACCTGGCGGCGGTGGCGCtgcggcacacacacacccatccacgTGCTCACCTGCACACAGGCGGCAAAAGAGCACGTGGCTGTGAGGTGTGTGCAAGTGACAGTAAACAGGTCAACAGCAGAGGGAACAGCAAAATACAGAGCACAcactgctgacacacacacacacac
>XM_034310621.1
ACGGGGTTTTCCGTAGGAGGAGCCTGACGATAAGGGCGCTACATTTCCGTTCACAACTCACACTGAGCCGAAGGAGCCAGGACCAGTCCGGATACGCGTGACACGGAACCGAAACGCGCGAGCCCGTGAATGGAGCGTGTTATCCGgaTGTTCGTCTCCGTTCTCCTCTTCCTTTGCTTAATGTGGGTGGTTCATGCCACCCTGTtagaagccccgcccactaGCCAATCAGgtcCACAATGTATGAACTGGGGTGTGTATGAAAGGGAAAAGGTGAGAGTGTATGAGGGTGAAGCGGGGAGAATACACTGCCCGCTCTTCTCACACCCGAAGCTGTATAACTACGCTCAGATCCAGAGCACGGGACACACACTGCTCTGGTACCGACATACACACGAGCTGGAGGAGCCGGTTGACCTGAGCCTCCCAACGTTCGTCAAACACAGAGACGCACTGTGGATACAGCCGGCCAGCATGCAGGACAGAGGAGAGTACATCTGCATTCtccgGAACATGTCATCGTGTGTGAAGATCGGTGTAAGACTGGATGTGGTTCCCCGTATGGGCGACTGTGACGACACACTGCACCGTAACTTCTCCGTCCCATTGCAGAGCAACTACACACTTCGCTGTCCCAACGTTCAGCACCTACCAAGCAAGACGTACAACGTCGTCTGGTACCatcactgTAAGAGTGACTTTTTCGACCGCATCTACAGGGATGTGCGCAATCACGAGCTGATGATCTATCAGATGTTCTATTTTTACGTCGGCCCTTACACCTGTGTCGTCACCTACCAGAGCAACGGACACACACTCAACTACACACATACCATCACCCTCAGAGCCGTGTccAACGGTGAGGCCAAAGAGCCAATGATTTGGAATCCAGCTGTTAATGATATTTACACTGTCAGTGTGGGCAAGGATGCAAAGTTGGCGTGCCGCGCGTTCCTGCCATACCTTAATGACGAGGAGCCGCAGGTGTGGTGGAGCATCAACAATAAGACGCTGGAAGAACTGTCAGAGCCTCGATACTCCTCACCTGCagtcagggtGCTGGAGGATGATTATGGTGACCGTAAAGTGGAGAGAATCTTGAATGTGTCACCGTTTAAAGAAGAAGATCTGCACAAAGAGTTTCGCTGCTCTGTTCAGAACAGCAAAGGATTTGACAGCAAAGTCGCCACGCTGAAGGAGgaggtgtacattCCCTCTGTAGAGCTCGGCTGTGGTCTCGGTGTGACTCTGGTTCTCGCGTTGTTGCTCTTTGTGTTGTATCGTGTGTTCTGGCTCGAGGTGCACCTTCTCTATCGCTCCTGGTTCGGCACGGACGAGAGagacacagatgGTAAGGAGTATGATGTGTACATCTCGTACGCACGCGAcactgaggaggaggagtttgTCATGGCAACGCTGAGGCGTGTGCTGGAGGCGGAGTTTGGATACACAGTGTGTATATTCGACAGAGACAGTCTGCCAGGAGGAActgtaacAGAGGAGACTCTGCAATTCGTCAGCCGTAGTCGGCGCTTGCTGGTCATACTGAGTGCATGCAGTGCATTTCGGGATGCCCAGGCTCTCCTGGAGGTTCGGGCGGGTGTGTCTGCCATGCTGCGGGGGGGCAGCGTGAAGCTGGTGCTGGTCCAATTTAAAACGACTCACACGACACGTGACAAGAGTCACAAACGGGACACACACAAGTGCGTGAAAGAGCTGCGCCGCGCACGTATCGCTCTAGCGCTAGTCCAGTGGGAGGGAGACAAGTCTACCTCGCTGACGTCTCACTTCTGGAAGAAACTGCGGCTGCAGCTGCCCGTCCGCACACCGCCACAAACGACAAAACATACACAGGATACGTCATATACCgatgaaaaacagaaatcagaGAGTACATTGCTAATGCTGGAATCGTTACATATGCCTAACACACATGAGAACAACAATACACCCAAAGAACACACAGACACGTTACACAAAACATAATCACCATCATCCATcgctgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K04723 IL1RAP; interleukin 1 receptor accessory protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310620.1 False 2013 mRNA 0.55 11 1636220 1652986
XM_034310621.1 True 2093 mRNA 0.52 11 1636220 1648195

Neighbor

gene id symbol gene type direction distance location
LOC113544536 LOC108277717 coding upstream 90959 1542618 ~ 1545261 (+)
trnag-ucc_21 NA coding upstream 115410 1520739 ~ 1520810 (+)
trnag-ucc_20 NA coding upstream 115899 1520250 ~ 1520321 (+)
trnag-ucc_19 NA coding upstream 116201 1519948 ~ 1520019 (+)
LOC113544655 LOC108277713 coding upstream 133029 1498176 ~ 1503191 (+)
LOC113544631 NA coding downstream 16012 1668998 ~ 1679881 (+)
LOC113544532 dync2h1,LOC108413322,LOC107566891 coding downstream 74479 1727465 ~ 1789018 (+)
aasdhppt aasdhppt coding downstream 255147 1908133 ~ 1925258 (+)
lrrc51 LOC108277926 coding downstream 319314 1972300 ~ 1974247 (+)
trnag-ucc_23 NA coding downstream 319923 1972909 ~ 1972980 (+)
G218391 NA non-coding upstream 41732 1558297 ~ 1594488 (+)
G218427 NA non-coding upstream 53427 1581397 ~ 1582793 (+)
G218383 NA non-coding upstream 68080 1567457 ~ 1568140 (+)
G218384 NA non-coding upstream 70912 1551354 ~ 1565308 (+)
G218385 NA non-coding upstream 73949 1530834 ~ 1562271 (+)
G218439 NA non-coding downstream 27234 1680220 ~ 1682118 (+)
G218450 NA non-coding downstream 145707 1798693 ~ 1829815 (+)
LOC117599082 NA non-coding downstream 192775 1845761 ~ 1846881 (+)
G218503 NA non-coding downstream 306260 1959246 ~ 2080124 (+)
G218534 NA non-coding downstream 546360 2199346 ~ 2199988 (+)
LOC113544658 NA other upstream 143189 1490294 ~ 1493031 (+)
nyap2a nyap2 other upstream 461473 1133034 ~ 1174747 (+)
trnav-aac_19 NA other upstream 521834 1114314 ~ 1114386 (+)
LOC117599076 NA other upstream 1246114 362243 ~ 390106 (+)
tmprss4a LOC108277792 other upstream 1308081 297497 ~ 328139 (+)
gria4a gria4a,LOC108278238,LOC107756206,LOC107566895,LOC107689577,LOC107560842,LOC107725765,LOC102308165,LOC107670112 other downstream 190371 1843357 ~ 1907243 (+)
G218476 NA other downstream 268785 1921771 ~ 1924284 (+)
LOC113544529 nox4 other downstream 384745 2037731 ~ 2052595 (+)
ctsc ctsc,LOC107735775 other downstream 473801 2126787 ~ 2132380 (+)
tiam1b LOC108278361,LOC108411134,LOC107585744,LOC107705640,LOC107558809,LOC107670130 other downstream 495005 2147991 ~ 2196665 (+)

Expression


Co-expression Network