G218391


Basic Information

Item Value
gene id G218391
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1558297 ~ 1594488 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU258680
caggtgtgtgtgtgtgtatgggagagagagagagagagagagagagagagagagggagatggggagagagagagagagagagagagagagagagagaggagagcgTGTACCTGAACGTTTGTCTCACAGCGTTGCTGCGCAGGtcgatgattttgatgaggtcGTCACGGGAACAGGTGAGCAGCTCTGTGCGGTCGTGATTCAGGTCCAACGACGTGACCCGACCAAACAGCtccaactcacacactgtactctcagcactacacacacacacacgcgcacacacacgcgcacacacacgcgcacacacacgcgcacacacacacacacacacacacacacacacccctacctGCGGACAGATAGACAGCAATGAACTGCTCCTTTCCCATCATGCTCACTGCGCTGGAGGAGAAACTCCACAACACATACATGTTGGCCGCCATGTGGAAGAATGAGTAGTGACTGAAAGTGGACAGCAGCATGGGCCAACACAGTgcacctacatacacacacaggaagaaagaaagaaagaaagaaagaaagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258680 True 548 lncRNA 0.53 3 1558297 1594488

Neighbor

gene id symbol gene type direction distance location
LOC113544536 LOC108277717 coding upstream 13036 1542618 ~ 1545261 (+)
trnag-ucc_21 NA coding upstream 37487 1520739 ~ 1520810 (+)
trnag-ucc_20 NA coding upstream 37976 1520250 ~ 1520321 (+)
trnag-ucc_19 NA coding upstream 38278 1519948 ~ 1520019 (+)
LOC113544655 LOC108277713 coding upstream 55106 1498176 ~ 1503191 (+)
LOC113544533 NA coding downstream 41732 1636220 ~ 1652986 (+)
LOC113544631 NA coding downstream 74510 1668998 ~ 1679881 (+)
LOC113544532 dync2h1,LOC108413322,LOC107566891 coding downstream 132977 1727465 ~ 1789018 (+)
aasdhppt aasdhppt coding downstream 313645 1908133 ~ 1925258 (+)
lrrc51 LOC108277926 coding downstream 377812 1972300 ~ 1974247 (+)
LOC117599019 NA non-coding upstream 63052 1493487 ~ 1495245 (+)
G217967 slc8a2,LOC108277508,LOC108433971,LOC103138329,LOC103358178 non-coding upstream 155762 1392182 ~ 1402535 (+)
G217931 NA non-coding upstream 340555 1198187 ~ 1217742 (+)
LOC113544667 NA non-coding upstream 360609 1196277 ~ 1197688 (+)
G217795 NA non-coding upstream 602875 954544 ~ 955422 (+)
G218439 NA non-coding downstream 85732 1680220 ~ 1682118 (+)
G218450 NA non-coding downstream 204205 1798693 ~ 1829815 (+)
LOC117599082 NA non-coding downstream 251273 1845761 ~ 1846881 (+)
G218503 NA non-coding downstream 364758 1959246 ~ 2080124 (+)
G218534 NA non-coding downstream 604858 2199346 ~ 2199988 (+)
LOC113544658 NA other upstream 65266 1490294 ~ 1493031 (+)
nyap2a nyap2 other upstream 383550 1133034 ~ 1174747 (+)
trnav-aac_19 NA other upstream 443911 1114314 ~ 1114386 (+)
LOC117599076 NA other upstream 1168191 362243 ~ 390106 (+)
tmprss4a LOC108277792 other upstream 1230158 297497 ~ 328139 (+)
gria4a gria4a,LOC108278238,LOC107756206,LOC107566895,LOC107689577,LOC107560842,LOC107725765,LOC102308165,LOC107670112 other downstream 248869 1843357 ~ 1907243 (+)
G218476 NA other downstream 327283 1921771 ~ 1924284 (+)
LOC113544529 nox4 other downstream 443243 2037731 ~ 2052595 (+)
ctsc ctsc,LOC107735775 other downstream 532299 2126787 ~ 2132380 (+)
tiam1b LOC108278361,LOC108411134,LOC107585744,LOC107705640,LOC107558809,LOC107670130 other downstream 553503 2147991 ~ 2196665 (+)

Expression


Co-expression Network