G238539


Basic Information

Item Value
gene id G238539
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 10179474 ~ 10191281 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU282203
GGAAAAAAAGAGGGTGCATAGAAAAATACGAGCTGGAGGTGCGCGCGCGCTATGAACGGAGAGTGCCAGAGAGGCAAagagtaaaagaaataaagcccACTTCTTGCGATTCCTTTGCTTTTACGTGGACAGCATTCGGCGAGTATCGAGGTGAGCTGACGAGGAGCTGAACCGAGCTTGTGCTGTTGCGAGTCTTATCACgggagtgtgattgctgtggagccgagttgtgtacctgtgtgataCGAGAGGGGCGTCGCTCATCGCGTTTGCTGAGATGGTGTTTGCGTGAGTGTTGGTATCCGTCTGAGAGAGCTAGAGGTACTGggaattttattcatttttgttcaaCTACAGTTGACATCCGGAAGAAACACACGGACAGTATTTTTGTTGTTCCTAAAAGGAAGCTGATTTCTGAACGAGTGACCTCTGCTGCTATTGTTGCGA

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282203 True 450 lncRNA 0.48 2 10179474 10191281

Neighbor

gene id symbol gene type direction distance location
cbr1l cbr1l,LOC108279390,LOC108439621,LOC107681174,LOC107706524,LOC792137 coding upstream 21014 10154952 ~ 10158460 (+)
LOC113541444 NA coding upstream 57361 10120502 ~ 10122113 (+)
chrdl2 chrdl2,LOC107548158,LOC107706526,LOC107703551,LOC107681089,LOC107718988 coding upstream 108798 10062090 ~ 10070676 (+)
xrra1 xrra1 coding upstream 119447 10031315 ~ 10060027 (+)
wdr73 wdr73 coding upstream 139268 10035706 ~ 10040206 (+)
cdc23 cdc23,LOC107692994,LOC106603039 coding downstream 67370 10258651 ~ 10268401 (+)
LOC113543096 arsb coding downstream 89263 10280544 ~ 10286789 (+)
LOC113543197 LOC108279380,LOC108412720,LOC103026588,LOC107574909 coding downstream 99503 10290784 ~ 10293140 (+)
klf4 klf4 coding downstream 189867 10381148 ~ 10391899 (+)
LOC113543146 LOC108279361 coding downstream 356153 10547434 ~ 10566993 (+)
G238512 NA non-coding upstream 29015 10150260 ~ 10150459 (+)
G238456 NA non-coding upstream 150327 10028935 ~ 10029147 (+)
G238086 NA non-coding upstream 777406 9398514 ~ 9402068 (+)
G238089 NA non-coding upstream 781190 9397907 ~ 9398284 (+)
G238060 NA non-coding upstream 816714 9362222 ~ 9362760 (+)
G238544 NA non-coding downstream 7709 10198990 ~ 10199221 (+)
LOC117599185 NA non-coding downstream 219900 10411181 ~ 10414759 (+)
G238611 NA non-coding downstream 225706 10416987 ~ 10419944 (+)
G238616 NA non-coding downstream 263112 10454393 ~ 10460086 (+)
G238639 tmem38b non-coding downstream 315856 10507137 ~ 10510123 (+)
myo5b myo5b,LOC107718970 other upstream 613361 9488179 ~ 9566113 (+)
c1qb NA other upstream 854606 9323196 ~ 9324868 (+)
trpc6a trpc6,LOC107718961,LOC107703531,LOC107551642 other upstream 921778 9243300 ~ 9257696 (+)
ncam1a ncam1 other upstream 1314677 8610227 ~ 8864797 (+)
nfrkb nfrkb other upstream 2560978 7601341 ~ 7618496 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other downstream 380588 10571869 ~ 10577432 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other downstream 487484 10678765 ~ 10694439 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other downstream 521002 10712283 ~ 10741380 (+)
G239282 NA other downstream 1646759 11838040 ~ 11848717 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 2802676 12993957 ~ 12996622 (+)

Expression


Co-expression Network