G238616


Basic Information

Item Value
gene id G238616
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 10454393 ~ 10460086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU282296
TGACAGCGTTAAAGATTCTCTGTGTCGACATCTGAAAATCAGTGGatcatttttgtgtcttttattttagcaactacaaacaaaggcaaaaacAAATCCTCTTTGAGTTTAAGTTAATATTCTGATAAATCATCAATCATCATTTAGTGCGTGTTTTCTTTGTCGTGTCCTCGAGCAAGTCCCTTAActttcaactgctcagttgtatcctgcctGGAAAcacagtgtttgtactgtaaatgtttcagacttattttacagtaatttttttacagTCTATCTAGCTTAGCACACAGGTTCTGCAACTAAAAGTTTCTGGTCACCATGTTGTTATTCTccaataatttgcatatttttgcatACTGAGTCATGATAGGACCAAGCCACTGAGCtttatttagtgacatcataAGCTTAGCTGCCCccaaatcagttttatacaaAAGTACTGACTCgtgaaatgtgaaattgttGAAAATTTGTGCAAAACATCAAATCTGTACAATCAAACTCAGCGTCCAGGTggaaattatttaaacattatgttGTAGATGTTCTTCTTTATTCCTCAGTGTCATGCAGAactgtacagaactgtgtagaACTGTGTAGAAgtatatttattgcattttctgGAGCTCAGTAGCCAGGTTGCAAGTCAGCGTGTGGTGATGGTAAAGTTACGCAGTagcacatgttcacacacacacacaggctgaagAAGATCTGCAGAACCTCTGAGAAGACGGACAACACAAAAGCCAATCAAAATGGTCGACTGGCTGCTTTCTTTACATGACGTGTTGCACTGTGGGGAATCGCTTCAGTGCTACACAAACTTCATTCTTCCTTCTGAAGGAAAACCCAAACAGAGCTGTAACAATACCTGAATGAGATGGTTAAAGTGTTAGCATGATGCTACATATACTGGAAATTAGGAAGTGataatgtaatgatttattaaaaccaCATATTCTATAGATCTACTATCTTTCTGTGGTTGTTTATGGATTAGTGAACATGTGGGTCAGCACTGAAAGTGAACCTTTGGCTATCACTCAGTTACATAACACAGCTTTTAGCTTTTCCAGGCCTcacacacacacacacacatacacacagtcattcaCATTATCTGGCAAAAACAGGGGAATGAAGAgataaaagaaaagataaaaataaagaatctgAGATGCTCTAAAACGACATTGTTAACGTATTAcatgttgtattttttcataatttaattCGTAATAAATAGTAGAAATATGAAtttgttatttcctgttaaacGCAGAGTGATAGTAATGTGCAACAAATACAATCCATGTTCACGTCAAATAAGATCTACAgaacaaaacaagaacaaagTGTTTTAAATCCTAGAAAACAAATATTCTTATGGAATATTAAACACGTTAAGATCTCAAGCAGACAACGGACAATAAAAACcatgttaatatgttaaaattAGCCTGATGAGAACCTGAGGTGGAAACATATTGACAAACACTCCATTAAAGTGTTTCAACGTTCCAAAGAAAATTCCTAAATCGCCATTTCGAGATTTAAATATCTTTCAAAACACAAGCAGAAATTTTCAAAACTTTTCACCACACTAAAGAATCACTAAAATGTATGCTAACATTCATGCTAATATGTCAAAATTGGCGTGTGGCTCTACAAAAACTCAATAAAGGTGTTTAAACGATAGGgaaaactaaaaacatttaaatgacaatttaatacattaataaatgctaaaatcTTCTAAAACCTTTACAAGAAATGAAAAGGGCACTAAAATTCATTCTAACAGTCATGctaatatgttaaaataatgtaaagaaCATAACAGGAACCTGAGGTGAAACTTTAATATCCACAAACACttcaaaaaagtgtttttattatcGAGGAGAAACATCAAAACCACCAAAATGAGGTTTAAAATCTCCAAAAGTACAATCAGGAACTTTGAAAACTTCTCACTAGACGTGTGAAGGCCACTACTGGTAGAACATTAGCATGAATGTGGCGACATTAACATTCTCCTCTCATCCACGGCTGAATGTGACAACCACCGTCGCGGCTtctattcacaaaaaaaatctcacaaaaaAGGGAACTacaactccaacacacacagacatgaacaAAACCATCgagaacaacaacaacctgAGTTCATCCTAAATCTCAAATGAACCATAAAGCcctgataaaaacaaaaaaaagaaaatatttactcTAACAGCTCACTATGTGAGGTTCCTCGTCCAAGCGAGAGTAGAAGCCAGAGAAGAGAAGTCAACCTTTGTTCTCCTGTCtcactcctcctccttcctttctttctttctctcctcggAGACTCATCCGCCTCCCTCCATTTTACAGAGAATAATGCCGTACCTGACAGCACGTCCAAAAAGACGCTGGAGACGGACAGAGATGAAGacaaggaagaagaagaagaaggaggaggaggaggaagtccAAACACTTCACTTTTCACCTCcacttccatccatccacatgAGAGAGTGCATGAAAAACATCCAGATCGTGTTCAAGCTGAACGTCAGGGAGCAGGAACATTGGCTTTtttgtactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggacgtggAGAGGAGCTGCAGCAATGCCAGCCACACTGACTGTCGCTTAATGGACGATCCCacaggagagaaagagcagaaaaGAAGCGCAATggcttctccttcttctcttccttacacacacacacacacacacacacaccagtcaaaTAAAGCTCTTTTGGACCAATTCCCTCTGCAAAGACCTCAAGCAAAGGTCCATTAGATGatctaaacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282296 True 2873 lncRNA 0.38 2 10454393 10460086

Neighbor

gene id symbol gene type direction distance location
klf4 klf4 coding upstream 62494 10381148 ~ 10391899 (+)
LOC113543197 LOC108279380,LOC108412720,LOC103026588,LOC107574909 coding upstream 161253 10290784 ~ 10293140 (+)
LOC113543096 arsb coding upstream 167604 10280544 ~ 10286789 (+)
cdc23 cdc23,LOC107692994,LOC106603039 coding upstream 185992 10258651 ~ 10268401 (+)
cbr1l cbr1l,LOC108279390,LOC108439621,LOC107681174,LOC107706524,LOC792137 coding upstream 295933 10154952 ~ 10158460 (+)
LOC113543146 LOC108279361 coding downstream 87348 10547434 ~ 10566993 (+)
LOC113543086 uhrf2,LOC108279364,LOC106568437 coding downstream 119567 10579653 ~ 10618170 (+)
specc1lb specc1l,LOC108437337 coding downstream 190415 10650501 ~ 10677009 (+)
snrpd3l snrpd3,smd3,LOC105014836,LOC106563120 coding downstream 247466 10707552 ~ 10711542 (+)
wdr34 wdr34 coding downstream 283285 10743371 ~ 10752685 (+)
G238611 NA non-coding upstream 34449 10416987 ~ 10419944 (+)
LOC117599185 NA non-coding upstream 39634 10411181 ~ 10414759 (+)
G238544 NA non-coding upstream 255172 10198990 ~ 10199221 (+)
G238539 NA non-coding upstream 263112 10179474 ~ 10191281 (+)
G238512 NA non-coding upstream 303934 10150260 ~ 10150459 (+)
G238639 tmem38b non-coding downstream 47051 10507137 ~ 10510123 (+)
G238710 setb,LOC108279391,LOC103047620,LOC108437330,LOC107584530,LOC107675639 non-coding downstream 181694 10641780 ~ 10647712 (+)
G238817 NA non-coding downstream 292731 10752817 ~ 10759534 (+)
G238818 sptan1 non-coding downstream 308740 10768826 ~ 10854255 (+)
G238830 NA non-coding downstream 325279 10785365 ~ 10788802 (+)
myo5b myo5b,LOC107718970 other upstream 888280 9488179 ~ 9566113 (+)
c1qb NA other upstream 1129525 9323196 ~ 9324868 (+)
trpc6a trpc6,LOC107718961,LOC107703531,LOC107551642 other upstream 1196697 9243300 ~ 9257696 (+)
ncam1a ncam1 other upstream 1589596 8610227 ~ 8864797 (+)
nfrkb nfrkb other upstream 2835897 7601341 ~ 7618496 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other downstream 111783 10571869 ~ 10577432 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other downstream 218679 10678765 ~ 10694439 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other downstream 252197 10712283 ~ 10741380 (+)
G239282 NA other downstream 1377954 11838040 ~ 11848717 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 2533871 12993957 ~ 12996622 (+)

Expression


Co-expression Network