pkig


Basic Information

Item Value
gene id pkig
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19198426 ~ 19222559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU304467
GGCTTCAATGGGGTTGTCAAAGAAACGTCGGGTTTGACGACGCTGCTGGCTCTTCGTGACGGACCCTTCGTCGAAAACGccaaataaatttcaaaatgaCGGAAAGGAAAGCCGAAATATAGCGAAGAGAAGacaagagaagagaacagaCGGTCCAGCTGCGTGGTAACAAGTGGAGGAAATTCAGGCGAATGAAGGTGGAATGAGAAGACAGGTCATGGGCAGATGATGGACGTTGAGTCATCTTACTCGGATTTCATTAATTGTGATCGCACAGGCCGCAGGAACGCAGTGCCGGACATTAAGGGAGACGGAACAGTGGTGGGCACCAGTGAACTGACCAAAGACATGGCTCAGATGGACCTGAAGGCAGgagAAGCCGATGCTGCCGGGGCTCCTGCTGCCGAAGCGGAAGCCTCGAGTAGTCAGGAGCAAGGGAAAGAAGGAGCATCTTAAAAATGAAGGCGCTAAAAGAGGAGAACCACCACCTCCTCTCTCGTTCCCCACACTGTGTGCGGTGAGGAGCTGCTCTGAGACGGGCATGCTTCATGTGCCTGAACGCTCTTGCGTTCCTGAGACACTCCAGGAGAAACCACTACACAGAATGGATTTGCCATGTACAACAATACACTCCATGTTGCGTTATTCCTGCCATTCCTCAGAGGAAGCACTGACTTTTTGATGCCTTTTCCATTCTGAACATGAACTATTTGGAAAATATGAGACCCTGGTTTCAGAACTTCATGATCTCAAACCAAGAAATACCAAATAACACATGCGTTGAGGATTCTGAAtcaatttgaatttttttttaaacagtaacaGGCATAGTTGTGACAAActgggaaaatatttatttcctatTATTCCCTGAGGTCAATAGTTTTGTGTTTCTGTACTACATTATATACTTTACAGTGTATGTAAcattattaacaatatttatataGTACATGAGTCAAAGCTTTCTGCTCACTcgaaaaactgc
>TU304470
GTTTTTCGTGTCACTAAGGGCGCGCCGTCCACTGTTGTTGTAGACTGTCGCctctcattaaaaatgaattacgTCTGACTCCTTTGTTGCATCATGCCTCTGTGGTGTAAAGGCATAGTCAAGTGGCCTCTTCTTGTGAATGTAGGCAGTTCCTGGTCTCGCTGAGTGAAAACAAACTACCAGACACTCTAGAAGCATGTGAGACTAAACTATACTGGACTCTAGCCCTCCAAGaactctgatctgatctgatcttaTTTCTTGATTTCTCAGATCTAATTCAGAAATATGTATCATCAAGCCTTCGTTCATAAAATGAAGAGTGAGCTCTAGTGTACTTTTATTAAAGTGTAGGGTGTGTGCTAAGAGATCCACTTGTGGTTATTGCATTATAATTCACTTAGGTTTACTCACTTAGCTGATGCTTTTAGCCAGACGATTAACCATTTCATGTCAGTGATTTATAGCTGCGTGGCCAGTTGCCCTGGGAAAGTTAGCTGCGATTAAGTACACGGTCTCTTCATATATCCCAAATGTTcagtatttatattaatacttgCATAAAGAGCAAGTCAGGAGCTGATCTATTTCGTTTTATCGTTATCCAAGATAAACTAAATGCCAGTCATCTTCGCTGTAATAATCAGAACACAGTCGTTACTGAGCATTGTTCAGATTTGTCTCTTTGCATATGGTAAATACAATAATTCCTGAATATGACCAGAACAACTGCATATATGTATGTGGTTTATTCACTCAGCACAAGTCACTTTACGCCCACTTCCTCCCTGATCATtgggagaggagaagaagagagctGTAGCTGCAGCTGTGTGGGATACGCGCAGTGCTCAGACAGcaaaagaaagagagcgagaaagagagacagcgagagctCGTCCATAAGGAGCATTAAACGCAGTCTGCGTTTACTTCCTTTTGTGGATTTTCTATCATCCCGGATCGCATCTCAGATGTCATCAGGCCTATTATGTGATCAGGATTTAAAATGAGTCTGGTGGAATGAGAAGACAGGTCATGGGCAGATGATGGACGTTGAGTCATCTTACTCGGATTTCATTAATTGTGATCGCACAGGCCGCAGGAACGCAGTGCCGGACATTAAGGGAGACGGAACAGTGGTGGGCACCAGTGAACTGACCAAAGACATGGCTCAGATGGACCTGAAGGCAGgagAAGCCGATGCTGCCGGGGCTCCTGCTGCCGAAGCGGAAGCCTCGAGTAGTCAGGAGCAAGGGAAAGAAGGAGCATCTTAAAAATGAAGGCGCTAAAAGAGGAGAACCACCACCTCCTCTCTCGTTCCCCACACTGTGTGCGGTGAGGAGCTGCTCTGAGACGGGCATGCTTCATGTGCCTGAACGCTCTTGCGTTCCTGAGACACTCCAGGAGAAACCACTACACAGAATGGATTTGCCATGTACAACAATACACTCCATGTTGCGTTATTCCTGCCATTCCTCAGAGGAAGCACTGACTTTTTGATGCCTTTTCCATTCTGAACATGAACTATTTGGAAAATATGAGACCCTGGTTTCAGAACTTCATGATCTCAAACCAAGAAATACCAAATAACACATGCGTTGAGGATTCTGAAtcaatttgaatttttttttaaacagtaacaGGCATAGTTGTGACAAActgggaaaatatttatttcctatTATTCCCTGAGGTCAATAGTTTTGTGTTTCTGTACTACATTATATACTTTACAGTGTATGTAAcattattaacaatatttatataGTACATGAGTCAAAGCTTTCTGCTCACTcgaaaaactgc
>XM_034311673.1
CGACAGAAACAACGCCAAACCCGCTTCTCATTGGAGGGAAGGAGCTGAGGCGAGGTCCCATTGGCTGAAGGCTAAAACTCCATTTTGCAAACAGCTGTTTGAGATGTAACCTCGCCCACTGGCTTCAATGGGGTTGTCAAAGAAACGTCGGGTTTGACGACGCTGCTGGCTCTTCGTGACGGACCCTTCGTCGAAAACGccaaataaatttcaaaatgaCGGAAAGGAAAGCCGAAATATAGCGAAGAGAAGacaagagaagagaacagaCGGTCCAGCTGCGTGGTAACAAGTGGAGGAAATTCAGGCGAATGAAGgagtgtatatttGGTAAAGAGGACATCAATGCTACTGAAGTACCAATCATCAGCAGCCATCTGCTCATGTGGAATGAGAAGACAGGTCATGGGCAGATGATGGACGTTGAGTCATCTTACTCGGATTTCATTAATTGTGATCGCACAGGCCGCAGGAACGCAGTGCCGGACATTAAGGGAGACGGAACAGTGGTGGGCACCAGTGAACTGACCAAAGACATGGCTCAGATGGACCTGAAGGCAGgagggtcgcggtggattcagagcctatcctgggacaTCTGGGCACAGGGCAGGAATAGACCCTGGGATGGGGAAGCCAGTCCATCATAGGGCACCTtatactcacacattcacacctaggagcagtTTTGGCATAGAGAGTgcacctaccggcatgtttttgggaggtgagaggaaaccagaggacacGGGATGAACATGACAGACGACACCGACAGAAACGCGAGCTCGGGATCACACTGGAGACCTTGGAAGTGTCAGACTGCAACACCAACCGCTGTGGCAACCTGCTGCCCTGAAATAACTATAAATCAAATTATgtgaaattgaaaataaaataaagcaaaaaatccAAGAACAACAGATAGGCCACAGTAAACTTGTTGTCAATCTGGAATTTAAAATCGCTTAGAGCTGGTGTTTGTAATGTTCCATGGAGCAGTATATAGGAGATTGGGGGCAATCTAAGGGATGCAATTTTACCACCTAAGCTGTGAGTGATGCCTGAGATTATCAGTGAGTAACACTGCCTCCGCTTATTGAAGTGCTCTGGATGGGCTAGACTTCTGCAGTAGATCaaatttgtatagcacttttaacaacagacaaaGGCTCATGTCAAATTTGTGTAGAAATGAGGTAGTTCTTACCTATACAACAATAtagaattattttaatgatataaGCTATTCAGATCGCcttattattgtatattgtcACACCCCTATTGGTTATTTCCACATGTG
>XM_034311674.1
CATTGGAGGGAAGGAGCTGAGGCGAGGTCCCATTGGCTGAAGGCTAAAACTCCATTTTGCAAACAGCTGTTTGAGATGTAACCTCGCCCACTGGCTTCAATGGGGTTGTCAAAGAAACGTCGGGTTTGACGACGCTGCTGGCTCTTCGTGACGGACCCTTCGTCGAAAACGccaaataaatttcaaaatgaCGGAAAGGAAAGCCGAAATATAGCGAAGAGAAGacaagagaagagaacagaCGGTCCAGCTGCGTGGTAACAAGTGGAGGAAATTCAGGCGAATGAAGgagtgtatatttGGTAAAGAGGACATCAATGCTACTGAAGTACCAATCATCAGCAGCCATCTGCTCATGTGGAATGAGAAGACAGGTCATGGGCAGATGATGGACGTTGAGTCATCTTACTCGGATTTCATTAATTGTGATCGCACAGGCCGCAGGAACGCAGTGCCGGACATTAAGGGAGACGGAACAGTGGTGGGCACCAGTGAACTGACCAAAGACATGGCTCAGATGGACCTGAAGGCAGgagAAGCCGATGCTGCCGGGGCTCCTGCTGCCGAAGCGGAAGCCTCGAGTAGTCAGGAGCAAGGGAAAGAAGGAGCATCTTAAAAATGAAGGCGCTAAAAGAGGAGAACCACCACCTCCTCTCTCGTTCCCCACACTGTGTGCGGTGAGGAGCTGCTCTGAGACGGGCATGCTTCATGTGCCTGAACGCTCTTGCGTTCCTGAGACACTCCAGGAGAAACCACTACACAGAATGGATTTGCCATGTACAACAATACACTCCATGTTGCGTTATTCCTGCCATTCCTCAGAGGAAGCACTGACTTTTTGATGCCTTTTCCATTCTGAACATGAACTATTTGGAAAATATGAGACCCTGGTTTCAGAACTTCATGATCTCAAACCAAGAAATACCAAATAACACATGCGTTGAGGATTCTGAAtcaatttgaatttttttttaaacagtaacaGGCATAGTTGTGACAAActgggaaaatatttatttcctatTATTCCCTGAGGTCAATAGTTTTGTGTTTCTGTACTACATTATATACTTTACAGTGTATGTAAcattattaacaatatttatataGTACATGAGTCAAAGCTTTCTGCTCACTcgaaaaactgcatttgttttctctttatattatatgtacCTCAATAAATGGGAATGacattacaa

Function

NR:

description
PREDICTED: cAMP-dependent protein kinase inhibitor gamma

GO:

id name namespace
GO:0006469 negative regulation of protein kinase activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU304467 False 988 lncRNA 0.45 3 19198546 19222505
TU304470 True 1809 lncRNA 0.43 3 19203336 19222505
XM_034311673.1 False 1306 mRNA 0.46 4 19198426 19221887
XM_034311674.1 False 1202 mRNA 0.45 4 19198454 19222559

Neighbor

gene id symbol gene type direction distance location
ttpal ttpal,LOC107716173,LOC107695756,LOC107673079,LOC107564663,LOC107568409 coding upstream 3568 19190772 ~ 19194858 (+)
hnf4a hnf4a,LOC107673078,LOC107737506,LOC107568408 coding upstream 10467 19167301 ~ 19187959 (+)
r3hdml r3hdml coding upstream 33165 19161213 ~ 19165261 (+)
rbms2b rbms2b,LOC108275993,LOC108425569,LOC107716168,LOC107737513 coding upstream 80863 19091010 ~ 19117563 (+)
trnae-cuc_34 NA coding upstream 165438 19032917 ~ 19032988 (+)
ccn5 wisp2 coding downstream 40858 19263417 ~ 19271222 (+)
si:dkey-78k11.9 NA coding downstream 50728 19273287 ~ 19275753 (+)
pfkfb1 pfkfb1,LOC108276267,LOC108425577,LOC107574688,LOC107673088 coding downstream 60938 19283497 ~ 19294201 (+)
itih6 itih6 coding downstream 72960 19295519 ~ 19309834 (+)
atp6ap1b LOC108275744 coding downstream 100240 19322799 ~ 19331974 (+)
G257199 NA non-coding upstream 79893 19117877 ~ 19118533 (+)
G257196 NA non-coding upstream 132293 19065854 ~ 19066133 (+)
G257127 NA non-coding upstream 261584 18891889 ~ 18936842 (+)
LOC113530356 NA non-coding upstream 352079 18841753 ~ 18846347 (+)
G257068 NA non-coding upstream 577121 18620249 ~ 18621305 (+)
G257235 NA non-coding downstream 10444 19233003 ~ 19235261 (+)
G257232 NA non-coding downstream 18553 19241112 ~ 19241568 (+)
G257234 NA non-coding downstream 20626 19243185 ~ 19245707 (+)
G257242 NA non-coding downstream 28886 19251445 ~ 19251797 (+)
G257231 NA non-coding downstream 37680 19260239 ~ 19311826 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 264107 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2010049 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 2073475 17071136 ~ 17124951 (+)
G256046 NA other upstream 2690046 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 2802181 16363546 ~ 16396245 (+)
G257622 LOC108276210 other downstream 255743 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 402970 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 1168250 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 1287685 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 1680546 20903105 ~ 20907459 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021712 pkig coding NC_007134.7 CM002907.2 25879320 ~ 25942859 (+)