G258096 (hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651)


Basic Information

Item Value
gene id G258096
gene name hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20390809 ~ 20398714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305571
CACGTGGTCCTCACTCTATGAACATGAACTTTACGTTCTTGTCTCCTCTTTGGATCTCCCCATCTATCGACTGAAGAGCCTGCGTTGCTGTTGAAATGATCTTAACATCCgactttttctttcattttcggCCTTTTCGACGTGCGGCAGATGGATTTTAAAGCACAGAATCTTCCGTCTCGACTGCCTCGTCGGCAGTAATGACTGTAGCCTACAGAAGTCGCCGCCTCCTCTAGCCTTCGTTCTGCCTGCCTGTGTTATCCCCAAGAGGGGAAGCGACAGCACGGgtgactgaagtgtgtgtgctcgtgtgtgtggTTTAGGAATGGGGGTGTAAATACCACCGTCTGTCCTTTACAAGACATTTCCCCTCCTGCCTCGATCAGTTATATCGAGTCTGGCAGGGGAAAGATCACATCCGTGTCCTGCTGAGCCACCGAGCGTCATGAGAACAGAAGGAAGAGTGCGGACATTTCTCGTCTTACGGCTCCACTGTGACCCAGAACCGGATTTACGCGTCCCCTTTCTATTCGCCACAAGACAACGTTGTGTTCGGGTCAAGCCGGGGACCGTACGAGTACGGATCTAATGTGTTCCTCCAAGACAAGGAAGTGCTTCCCAGCTGCAGGCAAACTAGCATGGGAATCAACGCTCAGAGCCACGTAGCTCAGGAGTACAGCCTGGAACACGGTCGAGGCGTTGCGCAGGAGCAAAAAGGGAACCAGATCCAGATCTACCCGTGGATGCAGCGCATGAACTCGCACAGCGgagTTGGGTACGGCTCTGACAGAAGGAGAGGTCGACAGATTTACTCCCGATACCAAACCCTGGAGCTAGAAAAGGAGTTCCACTTCAATCGCTACTTGACCAGACGCAGACGGATAGAGATTGCCAATGCTCTTTGTTTAACAGAGCGCCAAATTAAAATTTGGTTCCAGAACCGCCGCATGAAGTGGAAGAAAGAGACCAACCTGACTTCGACTGTAACTGGGACAGATTCGACTGGTGCTGCCCAGGGggaagaaaaacagagcaaTCAGGAGGAGACAGAAGAAGTTAAAAACAAAGACTaatagatttgtttttatttgtaaacgCCTGTTAAACTGCAACGTAACTACCTATAAACTCTCAGAAATGCAATTATAACTGCATGGACTGTGTATTCTGCTATACCTTCACACTCATTTCCTGATCATTATCACACAAATacgtgcagagagagagagagagagagagaaagagagagagaggtggtaTGCAGAATTATGCTAATCACTCTTTGTATTAAGAATATGTTTTGCCTCATTTTAGGCAGTTTAGATGCAATATCACAGACGCTGTTGTTCGGCAACCAGTCTTAATAGTATAGTGTTCTTTATGCTTGTAAATAGTTACTCTATGAAACAAACTGTAAACTAATTGGGTCAATGGGCTTTCTCGTTGAGTTTGCAAACAAAGTACCATTACCATTCCAAATGTGAAGGAAGTGTAGTCTATGCACATGTGTTACTTTGTTCTCGTTCAATTAGCACCAACACTGGTGGGATGATCCATGCTACCTACGTTCTTATGGATTTTAATAACTTCATCCCGTCAGTGCGTGGATGTACAAAACGCCGCTGTACTGGCTAAATATTTACTGTTCAGCTAATTTCATACCAATTCAACACACACTTATAGTCATGCTTATAAAGTTGTcttaaagtgaataaaaact

Function

symbol description
hoxc6a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including ectoderm; mesoderm; nervous system; pectoral fin; and somite. Orthologous to human HOXC6 (homeobox C6).
hoxc6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic skeletal system development. Located in cytosol and nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305571 True 1720 TUCP 0.46 3 20390809 20398714

Neighbor

gene id symbol gene type direction distance location
hoxc8a hoxc8,hoxc8a,LOC108433404,LOC107593970,LOC107664222,LOC107598875,LOC103032829,LOC107697938,LOC107714926 coding upstream 3981 20370096 ~ 20386828 (+)
hoxc9a hoxc9,hoxc9a,LOC107697937,LOC107707007,LOC103033146,LOC107593969,LOC107598864,LOC107714960 coding upstream 10779 20377228 ~ 20380030 (+)
hoxc10a hoxc10 coding upstream 20793 20366457 ~ 20370016 (+)
hoxc11a hoxc11,LOC108276183,LOC107715002,LOC108433364,LOC107593971,LOC107706974,LOC107664237 coding upstream 29530 20358172 ~ 20361279 (+)
hoxc12a hoxc12a,LOC108275575,LOC108433365,LOC103031159,LOC107664239,LOC107593973,LOC107697936,LOC107715004 coding upstream 39880 20347159 ~ 20350929 (+)
hoxc5a hoxc5 coding downstream 982 20399696 ~ 20402543 (+)
hoxc4a hoxc4,hoxc4a,LOC108433407,LOC103034018,LOC107714997,LOC107598886,LOC107664204 coding downstream 12659 20411373 ~ 20413861 (+)
hoxc1a NA coding downstream 40540 20439254 ~ 20446982 (+)
copz1 copz1,LOC107664248 coding downstream 138992 20537706 ~ 20544797 (+)
lima1a LOC108275931 coding downstream 187453 20586167 ~ 20610713 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 3996 20369995 ~ 20386813 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 281583 20108390 ~ 20109226 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding upstream 286769 20101008 ~ 20104040 (+)
G257814 NA non-coding upstream 291311 20099230 ~ 20099498 (+)
LOC113530699 NA non-coding upstream 320561 20058251 ~ 20070248 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding downstream 169076 20567790 ~ 20576789 (+)
G258162 NA non-coding downstream 212827 20611541 ~ 20657067 (+)
G258273 NA non-coding downstream 264968 20663682 ~ 20680938 (+)
G258275 LOC108276173 non-coding downstream 283656 20682370 ~ 20756538 (+)
LOC117599265 NA non-coding downstream 298271 20696985 ~ 20699668 (+)
si:ch73-206d17.1 LOC108275771 other upstream 685746 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 911914 19478302 ~ 19478895 (+)
pkig NA other upstream 1168250 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 1456490 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 3202432 17175701 ~ 17188377 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 111530 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 504391 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 829606 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 1139331 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 2272684 22671398 ~ 22680542 (+)

Expression


Co-expression Network