G259097 (LOC108276376)


Basic Information

Item Value
gene id G259097
gene name LOC108276376
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22047140 ~ 22048369 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU306730
GCTGGTTGTAGCTGTTCCTCTGCTGCAGGAAGGTGCCGTGCTGCGGGCTGAGCGGGGAGCGGCGGCTGGGCGCGTGCTGCGGCGGAGCGCCGCCCATCTGCGGCGAGAAAGGAGCGCCGAACCCGTGCGCGTTCACACCGGGAGAGAAGCTATGGAAGAAGCCGGGATTCACCGAGGATGGGATTCCTGGGTAGAACCCTGCATCGGGTTCGGTACCAGGCATGATGTGACTCCCGCTGTTGGATACCGGCGGCGGGGGGGAGCTGGTGTGCACTGACCACGGTGCACCGAACCCGGGCAGGGAGGGGGAAGCAGCCGAGGTCTCGTGATGCGGGAGGCTCGTGAAGGCCGCCGCGAGATGCGCACTTGTGGGCTCCATTCGGATCTGGACCTTGTTGGGACTCACGGATGCGCTCGAGGGCGCCGCAGCATCGGTCAGAGCGTCCTCCGGGAGCTGACCGGGGCCTTCTGGGGCGCACTCGGAGTCTGCGTGCTGATTTTCGTTCCTTTCTCTCTCAAGGTCACGCAGTGACGCGACAGCACCAAAGCGGCCTTGTCCGGCCTTATAGTCGCTGAAGTCGTAGTCCGTGTGGGTATGACCGGTCCCGTTTTCGCCGCCGCCGCCGGTGGGTGGTGATCGCTCGGCCGCCGCGTTTCCGGCCTCGTCGCTCGACTCGGTGGACGCGACCTGACGCCGCGAGGCTGTCACCCCCGCGGGCTCATCCTGCATGTTTCGCCGGGGCGCGGCGGCCGACGGGAAGAGCGGGGACGCTGCTGCGCTGCTGCTGCGGGAGAGAGACGGCGGAGAGGCGGCGGGGAGGAGGAGGTCACCGGTGACCGGGGAGAGGCTCGAGTAGGACGATCTGAAAGCGCCGAACAGTGCGCTGCCGCTGTCGAGACTCGCTGTCTGTAACAAGCCGAAGCCGTAATCACCCATTTATTTGCGTCAAAATACGGGAATAAAAACGGGAGCTCGCGAATAGCCGCGGCCTTTTTTTCCCAAGAACAAAAACGGGAGCGCGCAGACAGTGACCTTTAACTTCCTATATAGCGTATAGAGAGAGGAGGAGCTGTAGGGGGTCGGTCGTCGAGAAATCGTCGGTACACGGTCGTCCGCCTGTACTCTCTTATTACTGATTAATCTGcggatattttattttattattattataatttttcgGACCGTTTTCCGCCGACCGACCGACTGCGCACCCCCCCTTCCTCGGCGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306730 True 1230 lncRNA 0.63 1 22047140 22048369

Neighbor

gene id symbol gene type direction distance location
LOC113530690 LOC108275738 coding upstream 80245 21963278 ~ 21966895 (+)
LOC113530693 LOC108275738 coding upstream 84228 21960427 ~ 21962912 (+)
LOC113530692 NA coding upstream 88444 21955558 ~ 21958696 (+)
abcg2a LOC108275736,LOC108435561 coding upstream 189281 21838989 ~ 21857859 (+)
fbxl5 fbxl5,LOC101481374 coding upstream 218517 21808314 ~ 21828623 (+)
ndnf ndnf,LOC107669702 coding downstream 22066 22070435 ~ 22087209 (+)
prdm5 prdm5,LOC102798237 coding downstream 50384 22098753 ~ 22148588 (+)
LOC113530350 LOC108275518,LOC108435541 coding downstream 197126 22245495 ~ 22252789 (+)
slc34a2b slc34a2,LOC108435540,LOC107710230,LOC107698513,LOC107549163 coding downstream 221332 22269701 ~ 22276968 (+)
psmb11b LOC108275645,LOC102798532,LOC102212057 coding downstream 258984 22307353 ~ 22308782 (+)
G259099 LOC108276376 non-coding upstream 4082 22042779 ~ 22043058 (+)
G259094 NA non-coding upstream 20498 22025808 ~ 22026642 (+)
G259093 cpeb2,LOC108276376 non-coding upstream 24668 22016111 ~ 22022472 (+)
G259087 NA non-coding upstream 40101 22006708 ~ 22007039 (+)
G259086 NA non-coding upstream 40610 22006330 ~ 22006530 (+)
G259078 NA non-coding downstream 39813 22088182 ~ 22088751 (+)
G259131 NA non-coding downstream 100536 22148905 ~ 22150799 (+)
LOC117599300 NA non-coding downstream 179595 22227964 ~ 22230680 (+)
G259267 NA non-coding downstream 432188 22480557 ~ 22481100 (+)
G259268 NA non-coding downstream 454318 22502687 ~ 22502905 (+)
LOC117599233 NA other upstream 504713 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 808141 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1139681 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1532945 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1648426 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 623029 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1323375 23371744 ~ 23383653 (+)
G259993 NA other downstream 1339169 23387538 ~ 23389314 (+)
G260415 NA other downstream 1983858 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2220208 24268577 ~ 24269267 (+)

Expression


Co-expression Network