ndnf (ndnf,LOC107669702)


Basic Information

Item Value
gene id ndnf
gene name ndnf,LOC107669702
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22070435 ~ 22087209 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921231.2
CAGCTCTCTACCCtttctcagttcagttcagtcagAGTCTGAATAGCAGAGGGGAGGCACACAGtgccaggagaaaaaaaaaaacctcaggaTAAcccctctgtctctcagtttGGAGTTTGGAGCGACCGCAAAGCCCGTCAGACCCGCAAGCAGCGCGCGCCGCATCGCATCACGCAGGCAATCCGGTGTGCAAAAGAGAGTGGAGGAATCTACTGCACAAGAGCCTAAAGGACAAACTTTACTCTTCTCACACTTCTCTTTTAAGTTCAgtgttttaatcttttaatgtaATGCGCCCGAGCTGAAGATCTGCGCTCCTGGAGGAGATCAAAAGTAACAGACTTTTATCCGGGAAGCAGATTTAACATTCATCTGGGccaaataaagcaaaacaagCAGGATGAGGCGAGTGTTTGGCTGCTTTGCAGTGCTGTTGTTGTCATCGGTGCTGGGTGTGTTTGGGCAGAAGTTACCCACTCGTGATGAAGGCCTGTTCCAGATGCAGATCCGGGATAAGGCTCTGTTTCATGACTCGTCTGTAATTCCAGATGGAGCTGAGATTAGTGGATACCTGTTCAGGGACACGCCGAAGAGGTACTATTTTGTGGTGGAGGAGGACAACACGCCGCTGTCAGTGACGGTGACGCCATGTGACGCTCCACTCGAGTGGAGGCTGACGCTACAGGAGCTGCCGGAGGAGGCCAGCGGAGAGGGATCAGGTGAGCCAGAGCCTCTGgagcagcagaagcagcaggTGACGGCCAGTGAAGGCACCGAACTCTTCTCTTACAAAGGCAACGATGTGGAGTCATTCGTCTCCAGCAGCTCACCCTCAGGCCTCTACCAGCTGGATATTCTCTCCACGGAAAAGGACAGCAGCCTGAAGATTTATGCCACCACCACACCAGAATCAGATCAGCCCTACCCAGAGCTGCCCTACGACCCCAGAGTGGACGTCACCAGTCTGGGCCGTACCACCGTCACGCTGGCGTGGAAGCCCACCCCTACTGGCTCACGAATGGGCCAGCCTGTGCACTACTGCGTGGTCGTCAACAAAGAGCACAACTTCAAGAGCCTGTGTGCTGCTGAGGCCAAGATGGGCACCGATGACTCCTTCATGGTAGCACCCAAGCCGGGTCTAGACTTCAGCCCATTTGACTTTGCCCGTTTTGGCTTTACTTCGCCAGAGAACGACCTCACCAAGGACCGCCATCGGTCTCTGAATGCCAACCGAGTGCCGGCTTCCAAGCAGTGGCGTTCTCCAGGTACCAATCCCAGGCCCTCAGACATCCGCAAGATCTGCATTGGCAACAAGAACATCTTTACCGTGTCGGGGCTGAGGCCGGCCACACAATATTACTTTGATGTGTTTGCGGTCAATGTAGCCTCCAACGCTAGTACGGCCTATGTTGGCACCTTCGCCCGCACCAAGGACGAGGCTGAGCCCAAGACTGTAGAGCTGAAGGATGGAAAGATGGCAGACATCTTTGTCGAGAGGAAAGGCATCAAGCTGCTGCGATTTGCTCCCGTTTCCTCCCACCGAcgtgtttctctttctgtgcaCTCCTGCTTGGATGCTGTTCATGTACAAGTACGCCGTGACGGTAAACTCGTGCTCTCACAGAACGTGGAAGGAGTGCGTGAATTCCAGCTCCGCGCCAAGCCCAAGGCCAAGTACCTTATCCGGGTACGCGGATCTCGCAAAGGTGCTTCAGCTCTGAAGGTGTTAGCAAGCACGCGTGCTGATGCCAAGCGGCCCTTCCCTTCTCTACCCGAGGATACACGAATCAAGGCCTTCGACAGACTACGCACATGCGAATCTGTCACTGTGGCCTGGCTCGGCACGCAGGAGCGCAACAAGTATTGCGTGTACCAGCGCGAGGTGCCTGATGGATACGGAGAGGAGCAGCGCCGCCGCCAACGCAACCAGTGTGCCGGACCCGAGACGCGTCGAAGAGATGAGAAAGTACTCTGCAAATACTTCCACAGCGCCAACCCGCACAAAGCCGTAACCACCGAAACCATCACAGGCCTGGAGCCGGGCAAGAGCTACCTCCTTGATGTCTACGCCATCGGTCATGGCGGACACTCGGTCAAGTACCAGAGCAAACTGGTGAAAACGAGGAAGTACTGCTAAAacgaaaacaaaacacatacaaaaaaatacaaaaaaattcccACAAAATAGACTCTGCACAgaagtaaatatattatatatataatgagagGAAAAGTTTATTTAACTGGAAGTGATATTCTactaagttgtttttttttttgctgactgACTACTTGGTGAGCCTAGTGGCAGAGCTCGAACTGCTTCTAGAGCAAGATAGCATCCTGTATGTTCTTTGCAAGTTAACGAGTGCCGTTAATGAGAGGTGCTGGGAGGTGCGTCATCCGTGTTACTCATCCTGGAATCATTGGTcattctgttttctgttgtGTTGTGAGAACTATGTTAAACTCATCTGCATATCGTTTGTGATCACATCAACCCCTCCCAATCTGCTCTCTCACTGAGTACTCACATTTAGAAAGAGTTCTTAAGTTATTTTATAcctcttgattttttttgctatttgaactgtttatttttttgcttgttacttgttatgattataattattCCTGCTATGAAAAAAAACTATGTTGTAAAATTCCCTGACGAAGTCGGGCGGTTTGTCGAGGTGTTGTCCCCTCCCCCCGCTGCCTTTGTCTGTATATTATCTCATTCTGTGAGTGAATCGCTTTGGGATTCTGTAAATGTGCTCTTCTCTGTGTCTGCTCTGCCTGTCACATGTACAGAGTGCTTCTGCCAATATTCATGTACATAAAACCCTAAATATAGAGGCCAGTAATCCCCCC
>XM_026921232.2
TCAGGGAATACCCTGTCCTTAACACTTTGTGCAAGACTGCAAAGATTCCTGAATGCACTTTTAGGACATCTGCATCCGAGACATTCAGGATGAGGCGAGTGTTTGGCTGCTTTGCAGTGCTGTTGTTGTCATCGGTGCTGGGTGTGTTTGGGCAGAAGTTACCCACTCGTGATGAAGGCCTGTTCCAGATGCAGATCCGGGATAAGGCTCTGTTTCATGACTCGTCTGTAATTCCAGATGGAGCTGAGATTAGTGGATACCTGTTCAGGGACACGCCGAAGAGGTACTATTTTGTGGTGGAGGAGGACAACACGCCGCTGTCAGTGACGGTGACGCCATGTGACGCTCCACTCGAGTGGAGGCTGACGCTACAGGAGCTGCCGGAGGAGGCCAGCGGAGAGGGATCAGGTGAGCCAGAGCCTCTGgagcagcagaagcagcaggTGACGGCCAGTGAAGGCACCGAACTCTTCTCTTACAAAGGCAACGATGTGGAGTCATTCGTCTCCAGCAGCTCACCCTCAGGCCTCTACCAGCTGGATATTCTCTCCACGGAAAAGGACAGCAGCCTGAAGATTTATGCCACCACCACACCAGAATCAGATCAGCCCTACCCAGAGCTGCCCTACGACCCCAGAGTGGACGTCACCAGTCTGGGCCGTACCACCGTCACGCTGGCGTGGAAGCCCACCCCTACTGGCTCACGAATGGGCCAGCCTGTGCACTACTGCGTGGTCGTCAACAAAGAGCACAACTTCAAGAGCCTGTGTGCTGCTGAGGCCAAGATGGGCACCGATGACTCCTTCATGGTAGCACCCAAGCCGGGTCTAGACTTCAGCCCATTTGACTTTGCCCGTTTTGGCTTTACTTCGCCAGAGAACGACCTCACCAAGGACCGCCATCGGTCTCTGAATGCCAACCGAGTGCCGGCTTCCAAGCAGTGGCGTTCTCCAGGTACCAATCCCAGGCCCTCAGACATCCGCAAGATCTGCATTGGCAACAAGAACATCTTTACCGTGTCGGGGCTGAGGCCGGCCACACAATATTACTTTGATGTGTTTGCGGTCAATGTAGCCTCCAACGCTAGTACGGCCTATGTTGGCACCTTCGCCCGCACCAAGGACGAGGCTGAGCCCAAGACTGTAGAGCTGAAGGATGGAAAGATGGCAGACATCTTTGTCGAGAGGAAAGGCATCAAGCTGCTGCGATTTGCTCCCGTTTCCTCCCACCGAcgtgtttctctttctgtgcaCTCCTGCTTGGATGCTGTTCATGTACAAGTACGCCGTGACGGTAAACTCGTGCTCTCACAGAACGTGGAAGGAGTGCGTGAATTCCAGCTCCGCGCCAAGCCCAAGGCCAAGTACCTTATCCGGGTACGCGGATCTCGCAAAGGTGCTTCAGCTCTGAAGGTGTTAGCAAGCACGCGTGCTGATGCCAAGCGGCCCTTCCCTTCTCTACCCGAGGATACACGAATCAAGGCCTTCGACAGACTACGCACATGCGAATCTGTCACTGTGGCCTGGCTCGGCACGCAGGAGCGCAACAAGTATTGCGTGTACCAGCGCGAGGTGCCTGATGGATACGGAGAGGAGCAGCGCCGCCGCCAACGCAACCAGTGTGCCGGACCCGAGACGCGTCGAAGAGATGAGAAAGTACTCTGCAAATACTTCCACAGCGCCAACCCGCACAAAGCCGTAACCACCGAAACCATCACAGGCCTGGAGCCGGGCAAGAGCTACCTCCTTGATGTCTACGCCATCGGTCATGGCGGACACTCGGTCAAGTACCAGAGCAAACTGGTGAAAACGAGGAAGTACTGCTAAAacgaaaacaaaacacatacaaaaaaatacaaaaaaattcccACAAAATAGACTCTGCACAgaagtaaatatattatatatataatgagagGAAAAGTTTATTTAACTGGAAGTGATATTCTactaagttgtttttttttttgctgactgACTACTTGGTGAGCCTAGTGGCAGAGCTCGAACTGCTTCTAGAGCAAGATAGCATCCTGTATGTTCTTTGCAAGTTAACGAGTGCCGTTAATGAGAGGTGCTGGGAGGTGCGTCATCCGTGTTACTCATCCTGGAATCATTGGTcattctgttttctgttgtGTTGTGAGAACTATGTTAAACTCATCTGCATATCGTTTGTGATCACATCAACCCCTCCCAATCTGCTCTCTCACTGAGTACTCACATTTAGAAAGAGTTCTTAAGTTATTTTATAcctcttgattttttttgctatttgaactgtttatttttttgcttgttacttgttatgattataattattCCTGCTATGAAAAAAAACTATGTTGTAAAATTCCCTGACGAAGTCGGGCGGTTTGTCGAGGTGTTGTCCCCTCCCCCCGCTGCCTTTGTCTGTATATTATCTCATTCTGTGAGTGAATCGCTTTGGGATTCTGTAAATGTGCTCTTCTCTGTGTCTGCTCTGCCTGTCACATGTACAGAGTGCTTCTGCCAATATTCATGTACATAAAACCCTAAATATAGAGGCCAGTAATCCCCCC

Function

symbol description
ndnf Predicted to enable heparin binding activity. Involved in gonadotrophin-releasing hormone neuronal migration to the hypothalamus. Acts upstream of or within embryonic neurocranium morphogenesis. Predicted to be located in extracellular region. Is expressed in central nervous system; cranial ganglion; hypochord; somite; and stomodeum. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism. Orthologous to human NDNF (neuron derived neurotrophic factor).

NR:

description
PREDICTED: protein NDNF

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921231.2 True 2874 mRNA 0.50 4 22070435 22087209
XM_026921232.2 False 2560 mRNA 0.51 4 22070982 22087209

Neighbor

gene id symbol gene type direction distance location
LOC113530690 LOC108275738 coding upstream 103540 21963278 ~ 21966895 (+)
LOC113530693 LOC108275738 coding upstream 107523 21960427 ~ 21962912 (+)
LOC113530692 NA coding upstream 111739 21955558 ~ 21958696 (+)
abcg2a LOC108275736,LOC108435561 coding upstream 212576 21838989 ~ 21857859 (+)
fbxl5 fbxl5,LOC101481374 coding upstream 241812 21808314 ~ 21828623 (+)
prdm5 prdm5,LOC102798237 coding downstream 11544 22098753 ~ 22148588 (+)
LOC113530350 LOC108275518,LOC108435541 coding downstream 158286 22245495 ~ 22252789 (+)
slc34a2b slc34a2,LOC108435540,LOC107710230,LOC107698513,LOC107549163 coding downstream 182492 22269701 ~ 22276968 (+)
psmb11b LOC108275645,LOC102798532,LOC102212057 coding downstream 220144 22307353 ~ 22308782 (+)
trnal-uaa_2 NA coding downstream 224597 22311806 ~ 22311888 (+)
G259097 LOC108276376 non-coding upstream 22066 22047140 ~ 22048369 (+)
G259099 LOC108276376 non-coding upstream 27377 22042779 ~ 22043058 (+)
G259094 NA non-coding upstream 43793 22025808 ~ 22026642 (+)
G259093 cpeb2,LOC108276376 non-coding upstream 47963 22016111 ~ 22022472 (+)
G259087 NA non-coding upstream 63396 22006708 ~ 22007039 (+)
G259078 NA non-coding downstream 973 22088182 ~ 22088751 (+)
G259131 NA non-coding downstream 61696 22148905 ~ 22150799 (+)
LOC117599300 NA non-coding downstream 140755 22227964 ~ 22230680 (+)
G259267 NA non-coding downstream 393348 22480557 ~ 22481100 (+)
G259268 NA non-coding downstream 415478 22502687 ~ 22502905 (+)
LOC117599233 NA other upstream 528008 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 831436 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1162976 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1556240 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1671721 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 584189 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1284535 23371744 ~ 23383653 (+)
G259993 NA other downstream 1300329 23387538 ~ 23389314 (+)
G260415 NA other downstream 1945018 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2181368 24268577 ~ 24269267 (+)

Expression


Co-expression Network