LOC117599300


Basic Information

Item Value
gene id LOC117599300
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22227964 ~ 22230680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579757.1
CAGAAAATGGCTTCCATGAAGGTCCAAGAGGCCCTGTGACTTTTGAGCTGAGCGTTTGTTGGTTGGACGaaagagctaaatgagaaaaacatttaaagaaaacaagccAACGATGACCCGCCGACTGCTCTGCTTCATACCCACGTTCATGTTGAATTCAGCGTATATGACCTGCGGACGTGTAGATCTCCAGCGATATCCTTCGATTAATCCGACTTTTTGAAGTTCACATCTTGCCATTTGTCTCACCTGTGTGACCTCTCTCGGTTCATTCGTGTCAAACCTGGCCCAGATTGCATCCAAAGCAAATTCATTATCTCAGGATGTGACATCAGGGGGTCGGCCTCATGGAGTTATTTAGCACACGAGTTGATCGGATCGTGCGTCGCGTTTGAAGAAGATTGGACAAAGATTGAAAGAGCATGACTGACAGTGCCTGGACGGAGTTAGGAGCTGTGAAGAGAGCAGACTCTGGTGCTCTGAGGCAGGTCCCTTGCCCTCGTATCTCCAACACTTTATCTTTCACGAGTTCAGGAGTACAGCTGCAACACACTGCCATCTAATGGAACATCTCTAAACCCTCAGATGAGTTTCTTCTCTTAGCCAGGAGCATCTGATCTGATTATAGGGACGTTCTGTTTCCTAAAGGTTACGTTGGAGCAAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579757.1 True 667 lncRNA 0.47 3 22227964 22230680

Neighbor

gene id symbol gene type direction distance location
prdm5 prdm5,LOC102798237 coding upstream 79376 22098753 ~ 22148588 (+)
ndnf ndnf,LOC107669702 coding upstream 140755 22070435 ~ 22087209 (+)
LOC113530690 LOC108275738 coding upstream 261069 21963278 ~ 21966895 (+)
LOC113530693 LOC108275738 coding upstream 265052 21960427 ~ 21962912 (+)
LOC113530692 NA coding upstream 269268 21955558 ~ 21958696 (+)
LOC113530350 LOC108275518,LOC108435541 coding downstream 14815 22245495 ~ 22252789 (+)
slc34a2b slc34a2,LOC108435540,LOC107710230,LOC107698513,LOC107549163 coding downstream 39021 22269701 ~ 22276968 (+)
psmb11b LOC108275645,LOC102798532,LOC102212057 coding downstream 76673 22307353 ~ 22308782 (+)
trnal-uaa_2 NA coding downstream 81126 22311806 ~ 22311888 (+)
utrn LOC108275814 coding downstream 84492 22315172 ~ 22501652 (+)
G259131 NA non-coding upstream 77165 22148905 ~ 22150799 (+)
G259078 NA non-coding upstream 139213 22088182 ~ 22088751 (+)
G259097 LOC108276376 non-coding upstream 179595 22047140 ~ 22048369 (+)
G259099 LOC108276376 non-coding upstream 184906 22042779 ~ 22043058 (+)
G259094 NA non-coding upstream 201322 22025808 ~ 22026642 (+)
G259267 NA non-coding downstream 249877 22480557 ~ 22481100 (+)
G259268 NA non-coding downstream 272007 22502687 ~ 22502905 (+)
G259403 NA non-coding downstream 353877 22584557 ~ 22585809 (+)
G259498 NA non-coding downstream 608537 22839217 ~ 22841739 (+)
G259536 NA non-coding downstream 782704 23013384 ~ 23015896 (+)
LOC117599233 NA other upstream 685537 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 988965 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1320505 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1713769 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1829250 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 440718 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1141064 23371744 ~ 23383653 (+)
G259993 NA other downstream 1156858 23387538 ~ 23389314 (+)
G260415 NA other downstream 1801547 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2037897 24268577 ~ 24269267 (+)

Expression


Co-expression Network