LOC113530350 (LOC108275518,LOC108435541)


Basic Information

Item Value
gene id LOC113530350
gene name LOC108275518,LOC108435541
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22245495 ~ 22252789 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920248.2
AAGCAACAGTTAACCCAGAAAGAATTTATAACTGTTCCGcaaaactggtagctataagcaTTTCTTACGTGTTAGCTCAATCAGATTTGTAGCTCTAGTATAAAACAATGCGGAAAActttacacacaaaacatctGGGCTTGGAGCAAGTGAAGCATTGTGTAAAGAGCTGTGTatgaactattcctttaatgcGTGGAGGTCAGTGACAGCTATATAAGCTCAATGCCACGCGTCCACACTGACACGCAAATATACATCATGCTAAAACGACTGGTCTTCTTCCTGCTGTTAGCAGCTTATGCCTATGGATGTGGCACTCCTGAGATTGAGCCGCTCCCGGGCAGAGTGGTGAACGGAGAAGAAGCCAGGCCTCACAGCTGGCCCTGGCAGatctCGCTCCAGTATAAACATGGAAGCCGCTGGTATCATACCTGTGGTGGGACACTAATCGCTCCACGCTGGGTTCTGACAGCTGGACACTGCATTTTCCCAGGTGATATTTATCGCATTGTCCTGGGAAAGCATGACCTCAGTGTGCAGGAGGACACGGAGCAGATCAGAGACGTCCTCCGCATCGTCGTCCATCCTAAATGGAACATCGAGTGTGTGGCTTGCGGtaaCGACATTGCTCTGCTGAAGCTGGATAAAGCTCCTGTTCTCAGTGCAAGCATTCAGATGGCCTGCATTCCTCCTGCTGGAGAAATCCTGCCCCATGACACGCCCTGCTACGTCTCTGGCTGGGGCGACCTCTACACCCATGGCCCCATACCTGATAAGCTGCAGCAGGCCATGTTGCCGGTGgtggagtacagtgtgtgtagccAGAGCGACTGGTGGGGCAAAAACGTGAAACCCACCATGGTGTGTGCAGGAGGAGATATTCGCTCTAGCTGCAATGGAGACTCTGGAGGTCCTCTGAACTGTAAGGGGAATGATGGTAAATGGTATGTTCAGGGCGTCACCAGTTTTGTGTCGTCCACCAACTGTAATGAACTGAAGAAACCCACAGTGTTCACGCGCACATCCGCCTTCAACGACTGGCTGGAtgagGTCATGCTTAAATACTGAGAATCTCTCATGGATCACTGAACGACTGTCGAGAATATCAAACCCATTCAGTATGTGCATTAACCCCTTAATAAACCCATTGTTCAGTGCTGCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01345 CELA3; pancreatic endopeptidase E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920248.2 True 1165 mRNA 0.50 8 22245495 22252789

Neighbor

gene id symbol gene type direction distance location
prdm5 prdm5,LOC102798237 coding upstream 96907 22098753 ~ 22148588 (+)
ndnf ndnf,LOC107669702 coding upstream 158286 22070435 ~ 22087209 (+)
LOC113530690 LOC108275738 coding upstream 278600 21963278 ~ 21966895 (+)
LOC113530693 LOC108275738 coding upstream 282583 21960427 ~ 21962912 (+)
LOC113530692 NA coding upstream 286799 21955558 ~ 21958696 (+)
slc34a2b slc34a2,LOC108435540,LOC107710230,LOC107698513,LOC107549163 coding downstream 16912 22269701 ~ 22276968 (+)
psmb11b LOC108275645,LOC102798532,LOC102212057 coding downstream 54564 22307353 ~ 22308782 (+)
trnal-uaa_2 NA coding downstream 59017 22311806 ~ 22311888 (+)
utrn LOC108275814 coding downstream 62383 22315172 ~ 22501652 (+)
stxbp3 stxbp3,LOC107565974,LOC107748431,LOC107680060 coding downstream 390738 22643527 ~ 22656044 (+)
LOC117599300 NA non-coding upstream 14815 22227964 ~ 22230680 (+)
G259131 NA non-coding upstream 94696 22148905 ~ 22150799 (+)
G259078 NA non-coding upstream 156744 22088182 ~ 22088751 (+)
G259097 LOC108276376 non-coding upstream 197126 22047140 ~ 22048369 (+)
G259099 LOC108276376 non-coding upstream 202437 22042779 ~ 22043058 (+)
G259267 NA non-coding downstream 227768 22480557 ~ 22481100 (+)
G259268 NA non-coding downstream 249898 22502687 ~ 22502905 (+)
G259403 NA non-coding downstream 331768 22584557 ~ 22585809 (+)
G259498 NA non-coding downstream 586428 22839217 ~ 22841739 (+)
G259536 NA non-coding downstream 760595 23013384 ~ 23015896 (+)
LOC117599233 NA other upstream 703068 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 1006496 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1338036 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1731300 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1846781 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 418609 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1118955 23371744 ~ 23383653 (+)
G259993 NA other downstream 1134749 23387538 ~ 23389314 (+)
G260415 NA other downstream 1779438 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2015788 24268577 ~ 24269267 (+)

Expression


Co-expression Network