LOC113530407 (gpr182,LOC108275868)


Basic Information

Item Value
gene id LOC113530407
gene name gpr182,LOC108275868
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20689186 ~ 20691614 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920339.2
agagagggggtgggagagagagaggagggctTAATGCCCCAAAGCAGCTAAGGAAAGGACTAAAGCGGCACAACTGTTCTGCCAGATCAGCCTTCATCTCTCCAGGACGCTGCACCATCAGAGGGGTCTTACCCTCACAAGAGCTCCACACTCCACAGCCAAGAAAATGAACCTCGATCACAACACATCAGACCACAATGAAACACCGTGGTTCTATGAATGTACCCTCAACCTGGACCGGGAATCTCGGCGCATTGCACTGTTCCTGCTCTACCTGTTCCTGTTCATGGTTGGCTTGTTGGAGAACTGTCTGGTGATTTGGGTAAACTGGCGTCGACGACGCTCGGCCAGTGGTGTACTCTTCTGTGTTATCAACATCAGTCTGTCTGACCTGATGGTGGTTTTCACTATGCCATTCTTCATGCTGGAGGTCACCATGGACAGGGTTTGGGTTTGGGGCCGATTCCTGTGCAAGGTTACGCACCTCATCTACGTCATTAACTTCTACAGCAGCTCCTTCTTCCTTGCCTTCATGACTCTGGAGCGGTACCTGACCTTAACACGGCCAACCACGCCCGCCTGCTTTCCACTGCAACCCAGGCACCGGCGATGGCTGCTGTGTGCTGGAGTGTGGCTTCTGTCCTTGGTGCTGGCACTGCTAGAAAATGTACATGTGGACCTGCTTGAGTGGGATGAACCAGGCTGCTACATGATGCCTGAGCTTCACTACACTGAATGGTTTGTCTCAGTTAGCTTCTTCTGCCTTATCTTCCAGTTTTTGGGGCCTGGGTCAGTTATCATCGCCTGTAACATTCTGATTGCGCGGGCTGTGCGTGCCTCTCCGGACGTCCAGAATCATAGGGACCTTTGGCTGTTGCACGTGTACTCACTCGTCTTTGTGGCCTGCTGGCTACCCTACCATGTTGTGATGTTCCTGATGATGGTGGATGACCTGAATCCACACTTGATGTCCTGCAACACTGTAGATATACTTTACTTCGCTTTCAGCGTTGTACAGTGCATCTCGCTCTTTCATTGCATTGCCAACCCCATTCTCTATAACTTCCTGAGCAAGAACTTTCGTGCCAACCTCATCAACGATATTCTTTCCCGTATTTCCTCAGCACCTGCCAACATTGGAGCCAATGCAGCTGATGGCGCAGGGACAGTATCACGAAAGGAGCGAAAACTCAGCAATGCCAGCACCAGTCACTCAGAGATAGGATCCTAAGAAGGGAAGTCTCCAATACGTCACAATGAGGTCTCCTGAGAGACATGAGGAAGCAGCATATATTTGTGCTGCTATGAAGAAAACATTTTCTAGATGGTCATCAAAGTAACTGTTTTACAAAATGTCCATGTCTCTGTATCCTAGTGTTAACACCTCCATGTAGCTAAAGAGACCGTTTCAGAACaattattctgatttttttctaaatcataAACTAAGGGCTTGGAGATCAGCCTCACTTGAAAATATTCTTGCAATTTTTTCAGTGCAAGAACCAATAGCCATTCAAAAAGACACTAAACGGTTTGTTCTTATTTGCTTGTAAACAGTGGAACTGGAAGGTCCAATGGTGTCAAAAGTGCGTGTAGAGAAACAGCTTTAGGAGTTCCTGTCAGTGGATTtaagaggaaggaagaaaacTCCCTACATGACACTCCCACAGGAAGCTGCTGACAAACATGCCACAGATAAAAGGAAGTCTAGAAATCAAACACTTGCAGAGGATGATGTCTGTACActggacaaaataaataaattggctTCACTACTAAAA

Function

symbol description
gpr182 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blood; cardiovascular system; endothelial cell; lateral mesoderm; and retina. Orthologous to human GPR182 (G protein-coupled receptor 182).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04242 ADMR; adrenomedullin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920339.2 True 1784 mRNA 0.47 2 20689186 20691614

Neighbor

gene id symbol gene type direction distance location
LOC113530755 gpr182,LOC108275868 coding upstream 2408 20684365 ~ 20686778 (+)
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding upstream 9116 20668113 ~ 20680070 (+)
igfbp6b igfbp6,igfbp6b,LOC108433391,LOC107697925,LOC107599019 coding upstream 23129 20661406 ~ 20666057 (+)
lima1a LOC108275931 coding upstream 78473 20586167 ~ 20610713 (+)
copz1 copz1,LOC107664248 coding upstream 144389 20537706 ~ 20544797 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding downstream 28251 20719865 ~ 20729933 (+)
march9 march9,LOC107593952,LOC107599679 coding downstream 46130 20737744 ~ 20751871 (+)
LOC113530777 LOC108276216 coding downstream 192078 20883692 ~ 20886509 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding downstream 208508 20900122 ~ 20902771 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 227474 20919088 ~ 20953971 (+)
G258273 NA non-coding upstream 8248 20663682 ~ 20680938 (+)
G258162 NA non-coding upstream 32119 20611541 ~ 20657067 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding upstream 112397 20567790 ~ 20576789 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 302373 20369995 ~ 20386813 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 579960 20108390 ~ 20109226 (+)
LOC117599265 NA non-coding downstream 5371 20696985 ~ 20699668 (+)
LOC117599266 NA non-coding downstream 16501 20708115 ~ 20711958 (+)
G258362 NA non-coding downstream 94628 20786242 ~ 20790145 (+)
LOC117599282 NA non-coding downstream 217202 20908816 ~ 20911082 (+)
G258439 NA non-coding downstream 284284 20975898 ~ 20976359 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 174991 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 290472 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 984123 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1210291 19478302 ~ 19478895 (+)
pkig NA other upstream 1466627 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 211491 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 536706 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 846431 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1979784 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2680130 23371744 ~ 23383653 (+)

Expression


Co-expression Network