itga5 (itga5,LOC107599342,LOC107723722)


Basic Information

Item Value
gene id itga5
gene name itga5,LOC107599342,LOC107723722
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17071136 ~ 17124951 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920459.2
ACGCAGCTTGTGACTACTCCCCCAATATTACCACAATTAAGAGAGAAAGGGGACGAAAGAAGAAGACGGTAGAAAAGAAGCTAAAGTGGACTGAAGTAGTGAAAGAACGAGAAACTGAGTTTCTACTTTAAGAGTCACCTTAAGGAACGCGCGAAAAGACATGAGATTTGCCTAGATTCTGGCAGTTTTACCAACTGAGGAGGACGCCATTTGACTCGTCACCTTTGTTGAGAAGAAACGGGCGAGTTTAATTCAATAGGTGGACTGACACCTCGAGTATCATGGGTTCCGAAAGGCGCCGCTCAACCACGGTGGCAGCTTTATTCCACATGGGCTGCTCGCTTTTCATCACATGCCTTTTTCCTTGGACCGTCGCGTTCAACTTAGATGTAGAAAACCCGTCGATATATACCGGCCCCGCAGGCAGCTATTTTGGCTATTCTGTGGACTTTTATATGGCACAGTCGACACGAGATGCAAGTATCATAGTTGGAGCACCAAAAGCTAACACCAGCCAGCCGGACATCAAAGAGGGAGGCTCGGTGTTCTACTGCCCATGGAGCCGTAACCTGTCTGACTGCCACAGCATAGAGTTTGACCGAAAAGGAGATCTTAATGTGAGCATCAATAATGTTGAAACCCAAGCTGAGTTCAAGTCCCACCAGTGGTTTGGAGCAACTGTACGTGCCCATGAAGACTCTGTCTTGGCTTGTGCACCTCTCTACTCCTGGAGAACCCAACAGGACATGCCTGAGTCAGATGTCACTGGTTCCTGCTACCTGTCCATtaaaaacttcaccaaatttgTGGAGTATGCTCCCTGCCGCACAGAATTTCATGGAATGAAGGGCCAAGGTTACTGTCAAGGTGGATTCAGTGCTGATTTCACCAAGGATGGAAAGGTAGTACTTGGAGGACCAGGCAGCTATTTTTGGCAAGGACAGCTTATCTCTGCTGTGAAGGAGGAAATCATCAAGGCCTACTACCCAGGCTATTTCCTCACATCAGTGGCAGGCCAGATTCAGACCAAGCAGAAAAAAGAGATCAACTTTGATGACAGCTACATGGGTTACTCTGTTGCAGTAGGAGAATTtaatggagatgatgatgaagACTTTGTAACAGGAGTTCCCAGAGGTGACCTTCTGTATGGCCAGGTGTCTATTCTTAATGGCTCTTTGGAGACCATGAAAACCTTTATTGGTGAACAGATGGGCTCCTACTTTGGCTATGCTGTAGCTGCTACAGACATCAACAATGATGGACTTACagatttgttggttggtgctccCATGTTCATGGTGCGTGACTCAgatgggaggttggaggaattAGGGCGAGTGTATGTGTATCTACAGATGGGTCCACTGGAGCTTGCACCACATCTACCTCACCTCACCGGCACGCAAATTTTCAGTCGGTTCGGCAGCTCGATCACACCTCTAGGAGATCTCAACCAGGATGGCTTTAACGACATTGCTATCAGTAGTCCATTTGGTGGGAAAGATGAACAAGGATTGGTCTTCATCTATAATGGTTATGCTAAGGGACTCAGGGAGAAGCCCTCTCAAGTGATTTCTGGTCAGTGGTCATCAGCTGCCCCTCCTGCACCTCCTGCCAGTTTTGGCTATACCATGAAAGGAGGAAAAGACTTGGATCACAATGGCTACCCAGATCTCATCGTTGGAGCTTTTGGAGCTGACAAGGCAGTTCTTTACAGATCTCGCCCAATTGTTAACACAAGTGCCACCTTAATTGTGTATCCAACAATGATTAATCCTGAGGAGAAGACCTGCACCATCAGCAGTGGAAACCAAACCACACAAGTTTCTTGTGTCAACTTGAGCTTCTGCCTTTCAGCCAATGGGAAGCACCTTCCAGAAAATCTAGtgtttaATGTGGAAGTGCAGCTTGACCAGCTGAAGCAGAAGGGAGCTGTTCGTAGGGCTTTGTTTTTGGACACCCAACAGGCCAGCCTGCAGAGGAAACTTAAGGTGCCCAATGAAGCCAAGGTCTGCCATGAGACTAAAATCTACCTGAGGGACGAAAAGGAATTTCGGGATAAGCTCTCCTCCATCTTTATCGCCCTCAACTTCAGTCTGGATGCACAGGCTCCCGCAGACAGACACGGCCTCTGGCCGATCCTCAACTATCAGACCACTGAGCTAATAGAGCAGAAGGCCCAAATTTTACTGGACTGTGGAGAAGACAATATCTGTGTCCCTGACCTGAAGCTTTCTGTAGAAGAtgGCAGGAAAGAAGTGTACATAGGGGATGATAATGCAATAACCCTGACTTTCAATGCGCGGAACGATGGAGGTGGTGCCTATGAAGCTGAGCTCTACGTAATGCTGCCTTCAGAGGCAGACTACAGTGGAATTGCCCGCAATAATGAGAGTCTGACTCAGCTGACATGCAGCTATGAAACAAAGAACCAGACACGCTACCTCATCTGTGACCTGGGAAATCCCATGAAGTCTGGCACCAACCTGTGGGCAGGTCTGCGTTTCACTGTGCCTCGGCTGCAGAATTCACAGAAGGTGGTACAATTTGACCTGCAGATTCGCAGtAAAAATGAGAATAACTCTGAGAGTGAGGTTGTCCCCTATAGGCTAGAGGTGGTGGTCAAGGCTGATGTTATTTTACTGGGTGTGTCTCAACCAGATAAGGTCTTCTTCCCACCTCCAAACTGGAAGGTGACCAAGAATGTTGCAGTGGAGCAAGAAATTGGGCCTCATGTGGAGCACATCTATGatTTGGTAAATAATGGTCCAAGCCGTATTAGTCACACACTTCTTCAACTGAAATGTCCCATGAAGCTGCATGACCAGAGGTTTATGTACCCTTTGGAGATCATCACTAAGGGGCCTGTAAACTGCACAACATACGATATTGTGAACCCCATGAACATAAAGCTTCAGCAGTCCACTCAGCAGCCTCCTTTATTGAGCCACCACATTGAGAAGCGTGAAACACacaggggagagctggctgagCTGACAAATCTGTCCTGTGCCAGTGTTGAGTGCTGGACCCTGGAGTGTAATGTGGGTGTATTGGAGAAAGGTACCAGTGCCATACTCCAGGTGCGTTCACGCATCTGGGGAGAGACCTTCACCATGAAAAAGTATAAGAATTTTATTCTGGAGTGTGTAGCTAGTTACAAGGTGGAAAAGATGCCCTATGCCATTTTGCCCAAGGAGATTCCAAGTGGTTCTAAAATgATGACCACACCTGTGGTGTGGAATAAACCAGATAGTCCTTATGATGTGCCTTTGTGGATCATCATTCTGGCAATACTGGCTGGTCTTTTGTTGCTGGCTCTGCTTATCTATGTTCTGTATAAActTGGTTTCTTTAAGAGAACTCCCTATGGCACTGCCATGGaaaaagcacagctgaaacCTCAGGCTGCATCTGAAGCTTAAAGCAGGCCTGAGACTGTTCAGTAAGGATGAAAGACCACTGGATATCCattgcactgcactgcactggACGGAAAGACCCCAAGGACTCAAAGccaaatgaatgttttttttttttttttgcctttttctttttgttgccTTGTTTTGCTGTGGGTTTGGATTGCATTCACCAGTATTAGCCTCACACTCAGTTGCAATTTTAGAGCCTGGTTCTACGGACCGAAAGTCTCCTACTCATTGTGAAGGACAAATCTTATTTTCCCTGCACATAACTATGCAGTGTTCActgtttctaatttttttttaagtgtttaacaTATTTTGGTGCTAGAAACGACGTTTTCACATTTTGCTCactacttttttaaatgtcaacAGTAATTAGAAGATCCTGTTTTAGAATTTGAGATTTAGTACTATATTTTACACACAACCAGTGATTTTATACACATTCTTTCCAGAGAATAAGGTCAGACTAGCACAGTCTTTATCACAACaatctttactttctttttaatgttcaatttaaaaacaattatatgTCTGTCATTTTAGAAGGTAGGCTTGAAGAATACTAACGGGTTTCagaggaaagtttttttttttttttttttttttttcctcctccattCTCTTTCGTCCACCTCTGTAACCCAACGAACTCGGGTTGGTGTCTGTCTCAGGTGATAAAGTTGAACAGCAGTGCTCAGATCAGGTGTGCCACACTCAAATGGGCTTGGAAGTCCACTGAGGATTGTATACTAAGTGCAACTGTTCCCTCCTGCTGACCTAATTAACAAGAGTGTTGCCTTCTAGTCATCTGTCATCTGGGACATGACTGGATGCACATCAAGCCTGTAAAACCTCATGAATTGCCTTGAAGCAGAGCTGTGCTTTGCCGATATATAGGACAGACTTGTGCCCTATGGCACACATAGCAGGAAGTCCAAACAGTCAGTGAGGGCTCACTGTGTACACAGAGTCCTTCCCATCTGTGCAAAGTACAGAAAACCCACTGTATACAGTTGGAATGGGTTTGTCTCAAAGTGTGTAATAGTCAGTGCACCTGTCAAATGAGTACTGTTAAGTGTCTATAGATCTTAAGGGATAAGGTGAGTAAGCAAAAGACAATCCCAGTCCAAGGCAGCAGTCTTAGCCAGGGACAGAATGTGGAAGACACACCCTTTtagtttgtgtttgtctgtctggtGTAAGTATGTGGATGTGTGCATACAAGTCTGTCTGGCTTTACTgatgtgagagaaagaggggtTTTCCTAGTTGCCCAGTTTCTTGTTGTATTTCCATTTTTGGCCATCCTGATATTTAATAGCATATTAATGCTAATGCAGAGCCTGGTGGCAAAGTGGACACTCATGGACAGAGATGCTGCATTCAACTGCATTAGACACTTATTAACTgcaagaaggaaagagaagggGCATAGGGAATTTTTAGGATCTGTATGTAAAGTGCAATActgttttctccttttcatcttattgtattttttttttgtcttttgttactACACCAGTGTTTTCGTACAGACAACAACCTTGTTGGAGTTTGAGTGATTATGCAGGAGAGTTTATGAcaattattatttcaataatcaaatatatgaaaattccccatgcattttttttaatcacaaaataGCTTTGTTTGAGCTGCCAAGGCTTTGTTTGATAATAGCATCAGCTATTTACTATGAGCACCGCACTATCATCCTTTAACAGTTAGTGCTatccaagagagaaaaatgaaaaactctcATAGAGTTAAAATGCTGTGATCTTTTATGGTGTCTGTTGTTCCAATGTTATATCTTGATTGCAAAAATGTAATGagtgtttttaattacacattGTTTAGAAACGCAACAGGCCTTGTTACAAATTGAGACTCAGAAATGATGTCGTTTGCCTGTTCTCAATGTTTTGCTCAGTTTCAGACATTTGTTTATACCTCCAAAATTtagattttgtttctttttccttttttaattttttttatttacatttctgcaGCAGGAAGCACTGGTTATATTTTTGTCCCATCCCAAACTTTTGTCCTACCCACAtcgtttcttttttgttttattaagttGTAAATATGATTTGgcaaggagattttttttttttaaactaaaactcTTATCTGACATAAAATTACATCACCCCATATTGGGGATAATTGGAGGGATGTTAAAGTGATTAATTATTTGTATGGTATTTTACAATTTGCATTTCAAATAAATCTTTCAATTTTTATGA
>XR_004579712.1
CACGCAGCTTGTGACTACTCCCCCAATATTACCACAATTAAGAGAGAAAGGGGACGAAAGAAGAAGACGGTAGAAAAGAAGCTAAAGTGGACTGAAGTAGTGAAAGAACGAGAAACTGAGTTTCTACTTTAAGAGTCACCTTAAGGAACGCGCGAAAAGACATGAGATTTGCCTAGATTCTGGCAGTTTTACCAACTGAGGAGGACGCCATTTGACTCGTCACCTTTGTTGAGAAGAAACGGGCGAGTTTAATTCAATAGGTGGACTGACACCTCGAGTATCATGGGTTCCGAAAGGCGCCGCTCAACCACGGTGGCAGCTTTATTCCACATGGGCTGCTCGCTTTTCATCACATGCCTTTTTCCTTGGACCGTCGCGTTCAACTTAGATGTAGAAAACCCGTCGATATATACCGGCCCCGCAGGCAGCTATTTTGGCTATTCTGTGGACTTTTATATGGCACAGTCGACACGAGATGCAAGTATCATAGTTGGAGCACCAAAAGCTAACACCAGCCAGCCGGACATCAAAGAGGGAGGCTCGGTGTTCTACTGCCCATGGAGCCGTAACCTGTCTGACTGCCACAGCATAGAGTTTGACCGAAAAGGAGATCTTAATGTGAGCATCAATAATGTTGAAACCCAAGCTGAGTTCAAGTCCCACCAGTGGTTTGGAGCAACTGTACGTGCCCATGAAGACTCTGTCTTGGCTTGTGCACCTCTCTACTCCTGGAGAACCCAACAGGACATGCCTGAGTCAGATGTCACTGGTTCCTGCTACCTGTCCATtaaaaacttcaccaaatttgTGGAGTATGCTCCCTGCCGCACAGAATTTCATGGAATGAAGGGCCAAGGTTACTGTCAAGGTGGATTCAGTGCTGATTTCACCAAGGATGGAAAGGTAGTACTTGGAGGACCAGGCAGCTATTTTTGGCAAGGACAGCTTATCTCTGCTGTGAAGGAGGAAATCATCAAGGCCTACTACCCAGGCTATTTCCTCACATCAGTGGCAGGCCAGATTCAGACCAAGCAGAAAAAAGAGATCAACTTTGATGACAGCTACATGGGTTACTCTGTTGCAGTAGGAGAATTtaatggagatgatgatgaagACTTTGTAACAGGAGTTCCCAGAGGTGACCTTCTGTATGGCCAGGTGTCTATTCTTAATGGCTCTTTGGAGACCATGAAAACCTTTATTGGTGAACAGATGGGCTCCTACTTTGGCTATGCTGTAGCTGCTACAGACATCAACAATGATGGACTTACagatttgttggttggtgctccCATGTTCATGGTGCGTGACTCAgatgggaggttggaggaattAGGGCGAGTGTATGTGTATCTACAGATGGGTCCACTGGAGCTTGCACCACATCTACCTCACCTCACCGGCACGCAAATTTTCAGTCGGTTCGGCAGCTCGATCACACCTCTAGGAGATCTCAACCAGGATGGCTTTAACGACATTGCTATCAGTAGTCCATTTGGTGGGAAAGATGAACAAGGATTGGTCTTCATCTATAATGGTTATGCTAAGGGACTCAGGGAGAAGCCCTCTCAAGTGATTTCTGGTCAGTGGTCATCAGCTGCCCCTCCTGCACCTCCTGCCAGTTTTGGCTATACCATGAAAGGAGGAAAAGACTTGGATCACAATGGCTACCCAGATCTCATCGTTGGAGCTTTTGGAGCTGACAAGGCAGTTCTTTACAGATCTCGCCCAATTGTTAACACAAGTGCCACCTTAATTGTGTATCCAACAATGATTAATCCTGAGGAGAAGACCTGCACCATCAGCAGTGGAAACCAAACCACACAAGTTTCTTGTGTCAACTTGAGCTTCTGCCTTTCAGCCAATGGGAAGCACCTTCCAGAAAATCTAGtgtttaATGTGGAAGTGCAGCTTGACCAGCTGAAGCAGAAGGGAGCTGTTCGTAGGGCTTTGTTTTTGGACACCCAACAGGCCAGCCTGCAGAGGAAACTTAAGGTGCCCAATGAAGCCAAGGTCTGCCATGAGACTAAAATCTACCTGAGGGACGAAAAGGAATTTCGGGATAAGCTCTCCTCCATCTTTATCGCCCTCAACTTCAGTCTGGATGCACAGGCTCCCGCAGACAGACACGGCCTCTGGCCGATCCTCAACTATCAGACCACTGAGCTAATAGAGCAGAAGGCCCAAATTTTACTGGACTGTGGAGAAGACAATATCTGTGTCCCTGACCTGAAGCTTTCTGTAGAAGAtgGCAGGAAAGAAGTGTACATAGGGGATGATAATGCAATAACCCTGACTTTCAATGCGCGGAACGATGGAGGTGGTGCCTATGAAGCTGAGCTCTACGTAATGCTGCCTTCAGAGGCAGACTACAGTGGAATTGCCCGCAATAATGAGAGTCTGACTCAGCTGACATGCAGCTATGAAACAAAGAACCAGACACGCTACCTCATCTGTGACCTGGGAAATCCCATGAAGTCTGGCACCAACCTGTGGGCAGGTCTGCGTTTCACTGTGCCTCGGCTGCAGAATTCACAGAAGGTGGTACAATTTGACCTGCAGATTCGCAGtAAAAATGAGAATAACTCTGAGAGTGAGGTTGTCCCCTATAGGCTAGAGGTGGTGGTCAAGGCTGATGTTATTTTACTGGGTGTGTCTCAACCAGATAAGGTCTTCTTCCCACCTCCAAACTGGAAGGTGACCAAGAATGTTGCAGTGGAGCAAGAAATTGGGCCTCATGTGGAGCACATCTATGatTTGGTAAATAATGGTCCAAGCCGTATTAGTCACACACTTCTTCAACTGAAATGTCCCATGAAGCTGCATGACCAGAGGTTTATGTACCCTTTGGAGATCATCACTAAGGGGCCTGTAAACTGCACAACATACGATATTGTGAACCCCATGAACATAAAGCTTCAGCAGTCCACTCAGCAGCCTCCTTTATTGAGCCACCACATTGAGAAGCGTGAAACACacaggggagagctggctgagCTGACAAATCTGCCTGTGCCAGTGTTGAGTGCTGGACCCTGGAGTGTAATGTGGGTGTATTGGAGAAAGGTACCAGTGCCATACTCCAGGTGCGTTCACGCATCTGGGGAGAGACCTTCACCATGAAAAAGTATAAGAATTTTATTCTGGAGTGTGTAGCTAGTTACAAGGTGGAAAAGATGCCCTATGCCATTTTGCCCAAGGAGATTCCAAGTGGTTCTAAAATgATGACCACACCTGTGGTGTGGAATAAACCAGATAGTCCTTATGATGTGCCTTTGTGGATCATCATTCTGGCAATACTGGCTGGT

Function

symbol description
itga5 Enables fibronectin binding activity and protein heterodimerization activity. Acts upstream of or within several processes, including camera-type eye development; cell migration involved in sprouting angiogenesis; and chordate embryonic development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cardiovascular system; ectoderm; head; mesoderm; and somite. Orthologous to human ITGA5 (integrin subunit alpha 5).

NR:

description
integrin alpha-5-like

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0001501 skeletal system development biological_process
GO:0085029 extracellular matrix assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG:

id description
K06484 ITGA5, CD49e; integrin alpha 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920459.2 True 5707 mRNA 0.43 30 17071137 17124951
XR_004579712.1 False 3308 misc_RNA 0.47 29 17071136 17120941

Neighbor

gene id symbol gene type direction distance location
csrnp2 csrnp2 coding upstream 36860 17005065 ~ 17034276 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding upstream 110570 16936562 ~ 16960566 (+)
pou6f1 pou6f1 coding upstream 157064 16872863 ~ 16914072 (+)
bin2a bin2 coding upstream 224151 16830566 ~ 16846985 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding upstream 247289 16795300 ~ 16823847 (+)
slc48a1a slc48a1a,LOC108275665,LOC108425489,LOC103038309 coding downstream 47241 17172192 ~ 17175513 (+)
hrct1 LOC108276455 coding downstream 64928 17189879 ~ 17194246 (+)
plxna2 plxna2,LOC108425528,LOC107594012 coding downstream 302351 17427302 ~ 17627058 (+)
si:dkey-261h17.1 NA coding downstream 524363 17649314 ~ 17676304 (+)
si:ch211-66i15.4 NA coding downstream 614320 17739271 ~ 17746529 (+)
G256322 NA non-coding upstream 12639 17058192 ~ 17058497 (+)
G256319 NA non-coding upstream 16045 17054866 ~ 17055091 (+)
LOC113530783 NA non-coding upstream 20205 17048077 ~ 17050931 (+)
G256239 NA non-coding upstream 147733 16922911 ~ 16923403 (+)
G256119 NA non-coding upstream 194100 16876802 ~ 16877036 (+)
G256405 NA non-coding downstream 72728 17197679 ~ 17197916 (+)
G256408 NA non-coding downstream 115937 17240888 ~ 17241933 (+)
G256425 NA non-coding downstream 141559 17266510 ~ 17266732 (+)
G256426 NA non-coding downstream 156369 17281320 ~ 17282500 (+)
G256448 NA non-coding downstream 203434 17328385 ~ 17328590 (+)
G256046 NA other upstream 562756 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 674891 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 744522 16232013 ~ 16326614 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other upstream 841730 16210090 ~ 16229406 (+)
rps21 rps21,LOC107666483 other upstream 1903468 15117070 ~ 15167668 (+)
LOC113530386 slc26a9 other downstream 50750 17175701 ~ 17188377 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 1754530 18879481 ~ 18934319 (+)
pkig NA other downstream 2073475 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2353351 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 2500578 19625529 ~ 19705063 (+)

Expression


Co-expression Network