RNA id: XM_026920459.2


Basic Information

Item Value
RNA id XM_026920459.2
length 5707
RNA type mRNA
GC content 0.43
exon number 30
gene id itga5
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17071136 ~ 17124951 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCAGCTTGTGACTACTCCCCCAATATTACCACAATTAAGAGAGAAAGGGGACGAAAGAAGAAGACGGTAGAAAAGAAGCTAAAGTGGACTGAAGTAGTGAAAGAACGAGAAACTGAGTTTCTACTTTAAGAGTCACCTTAAGGAACGCGCGAAAAGACATGAGATTTGCCTAGATTCTGGCAGTTTTACCAACTGAGGAGGACGCCATTTGACTCGTCACCTTTGTTGAGAAGAAACGGGCGAGTTTAATTCAATAGGTGGACTGACACCTCGAGTATCATGGGTTCCGAAAGGCGCCGCTCAACCACGGTGGCAGCTTTATTCCACATGGGCTGCTCGCTTTTCATCACATGCCTTTTTCCTTGGACCGTCGCGTTCAACTTAGATGTAGAAAACCCGTCGATATATACCGGCCCCGCAGGCAGCTATTTTGGCTATTCTGTGGACTTTTATATGGCACAGTCGACACGAGATGCAAGTATCATAGTTGGAGCACCAAAAGCTAACACCAGCCAGCCGGACATCAAAGAGGGAGGCTCGGTGTTCTACTGCCCATGGAGCCGTAACCTGTCTGACTGCCACAGCATAGAGTTTGACCGAAAAGGAGATCTTAATGTGAGCATCAATAATGTTGAAACCCAAGCTGAGTTCAAGTCCCACCAGTGGTTTGGAGCAACTGTACGTGCCCATGAAGACTCTGTCTTGGCTTGTGCACCTCTCTACTCCTGGAGAACCCAACAGGACATGCCTGAGTCAGATGTCACTGGTTCCTGCTACCTGTCCATtaaaaacttcaccaaatttgTGGAGTATGCTCCCTGCCGCACAGAATTTCATGGAATGAAGGGCCAAGGTTACTGTCAAGGTGGATTCAGTGCTGATTTCACCAAGGATGGAAAGGTAGTACTTGGAGGACCAGGCAGCTATTTTTGGCAAGGACAGCTTATCTCTGCTGTGAAGGAGGAAATCATCAAGGCCTACTACCCAGGCTATTTCCTCACATCAGTGGCAGGCCAGATTCAGACCAAGCAGAAAAAAGAGATCAACTTTGATGACAGCTACATGGGTTACTCTGTTGCAGTAGGAGAATTtaatggagatgatgatgaagACTTTGTAACAGGAGTTCCCAGAGGTGACCTTCTGTATGGCCAGGTGTCTATTCTTAATGGCTCTTTGGAGACCATGAAAACCTTTATTGGTGAACAGATGGGCTCCTACTTTGGCTATGCTGTAGCTGCTACAGACATCAACAATGATGGACTTACagatttgttggttggtgctccCATGTTCATGGTGCGTGACTCAgatgggaggttggaggaattAGGGCGAGTGTATGTGTATCTACAGATGGGTCCACTGGAGCTTGCACCACATCTACCTCACCTCACCGGCACGCAAATTTTCAGTCGGTTCGGCAGCTCGATCACACCTCTAGGAGATCTCAACCAGGATGGCTTTAACGACATTGCTATCAGTAGTCCATTTGGTGGGAAAGATGAACAAGGATTGGTCTTCATCTATAATGGTTATGCTAAGGGACTCAGGGAGAAGCCCTCTCAAGTGATTTCTGGTCAGTGGTCATCAGCTGCCCCTCCTGCACCTCCTGCCAGTTTTGGCTATACCATGAAAGGAGGAAAAGACTTGGATCACAATGGCTACCCAGATCTCATCGTTGGAGCTTTTGGAGCTGACAAGGCAGTTCTTTACAGATCTCGCCCAATTGTTAACACAAGTGCCACCTTAATTGTGTATCCAACAATGATTAATCCTGAGGAGAAGACCTGCACCATCAGCAGTGGAAACCAAACCACACAAGTTTCTTGTGTCAACTTGAGCTTCTGCCTTTCAGCCAATGGGAAGCACCTTCCAGAAAATCTAGtgtttaATGTGGAAGTGCAGCTTGACCAGCTGAAGCAGAAGGGAGCTGTTCGTAGGGCTTTGTTTTTGGACACCCAACAGGCCAGCCTGCAGAGGAAACTTAAGGTGCCCAATGAAGCCAAGGTCTGCCATGAGACTAAAATCTACCTGAGGGACGAAAAGGAATTTCGGGATAAGCTCTCCTCCATCTTTATCGCCCTCAACTTCAGTCTGGATGCACAGGCTCCCGCAGACAGACACGGCCTCTGGCCGATCCTCAACTATCAGACCACTGAGCTAATAGAGCAGAAGGCCCAAATTTTACTGGACTGTGGAGAAGACAATATCTGTGTCCCTGACCTGAAGCTTTCTGTAGAAGAtgGCAGGAAAGAAGTGTACATAGGGGATGATAATGCAATAACCCTGACTTTCAATGCGCGGAACGATGGAGGTGGTGCCTATGAAGCTGAGCTCTACGTAATGCTGCCTTCAGAGGCAGACTACAGTGGAATTGCCCGCAATAATGAGAGTCTGACTCAGCTGACATGCAGCTATGAAACAAAGAACCAGACACGCTACCTCATCTGTGACCTGGGAAATCCCATGAAGTCTGGCACCAACCTGTGGGCAGGTCTGCGTTTCACTGTGCCTCGGCTGCAGAATTCACAGAAGGTGGTACAATTTGACCTGCAGATTCGCAGtAAAAATGAGAATAACTCTGAGAGTGAGGTTGTCCCCTATAGGCTAGAGGTGGTGGTCAAGGCTGATGTTATTTTACTGGGTGTGTCTCAACCAGATAAGGTCTTCTTCCCACCTCCAAACTGGAAGGTGACCAAGAATGTTGCAGTGGAGCAAGAAATTGGGCCTCATGTGGAGCACATCTATGatTTGGTAAATAATGGTCCAAGCCGTATTAGTCACACACTTCTTCAACTGAAATGTCCCATGAAGCTGCATGACCAGAGGTTTATGTACCCTTTGGAGATCATCACTAAGGGGCCTGTAAACTGCACAACATACGATATTGTGAACCCCATGAACATAAAGCTTCAGCAGTCCACTCAGCAGCCTCCTTTATTGAGCCACCACATTGAGAAGCGTGAAACACacaggggagagctggctgagCTGACAAATCTGTCCTGTGCCAGTGTTGAGTGCTGGACCCTGGAGTGTAATGTGGGTGTATTGGAGAAAGGTACCAGTGCCATACTCCAGGTGCGTTCACGCATCTGGGGAGAGACCTTCACCATGAAAAAGTATAAGAATTTTATTCTGGAGTGTGTAGCTAGTTACAAGGTGGAAAAGATGCCCTATGCCATTTTGCCCAAGGAGATTCCAAGTGGTTCTAAAATgATGACCACACCTGTGGTGTGGAATAAACCAGATAGTCCTTATGATGTGCCTTTGTGGATCATCATTCTGGCAATACTGGCTGGTCTTTTGTTGCTGGCTCTGCTTATCTATGTTCTGTATAAActTGGTTTCTTTAAGAGAACTCCCTATGGCACTGCCATGGaaaaagcacagctgaaacCTCAGGCTGCATCTGAAGCTTAAAGCAGGCCTGAGACTGTTCAGTAAGGATGAAAGACCACTGGATATCCattgcactgcactgcactggACGGAAAGACCCCAAGGACTCAAAGccaaatgaatgttttttttttttttttgcctttttctttttgttgccTTGTTTTGCTGTGGGTTTGGATTGCATTCACCAGTATTAGCCTCACACTCAGTTGCAATTTTAGAGCCTGGTTCTACGGACCGAAAGTCTCCTACTCATTGTGAAGGACAAATCTTATTTTCCCTGCACATAACTATGCAGTGTTCActgtttctaatttttttttaagtgtttaacaTATTTTGGTGCTAGAAACGACGTTTTCACATTTTGCTCactacttttttaaatgtcaacAGTAATTAGAAGATCCTGTTTTAGAATTTGAGATTTAGTACTATATTTTACACACAACCAGTGATTTTATACACATTCTTTCCAGAGAATAAGGTCAGACTAGCACAGTCTTTATCACAACaatctttactttctttttaatgttcaatttaaaaacaattatatgTCTGTCATTTTAGAAGGTAGGCTTGAAGAATACTAACGGGTTTCagaggaaagtttttttttttttttttttttttttcctcctccattCTCTTTCGTCCACCTCTGTAACCCAACGAACTCGGGTTGGTGTCTGTCTCAGGTGATAAAGTTGAACAGCAGTGCTCAGATCAGGTGTGCCACACTCAAATGGGCTTGGAAGTCCACTGAGGATTGTATACTAAGTGCAACTGTTCCCTCCTGCTGACCTAATTAACAAGAGTGTTGCCTTCTAGTCATCTGTCATCTGGGACATGACTGGATGCACATCAAGCCTGTAAAACCTCATGAATTGCCTTGAAGCAGAGCTGTGCTTTGCCGATATATAGGACAGACTTGTGCCCTATGGCACACATAGCAGGAAGTCCAAACAGTCAGTGAGGGCTCACTGTGTACACAGAGTCCTTCCCATCTGTGCAAAGTACAGAAAACCCACTGTATACAGTTGGAATGGGTTTGTCTCAAAGTGTGTAATAGTCAGTGCACCTGTCAAATGAGTACTGTTAAGTGTCTATAGATCTTAAGGGATAAGGTGAGTAAGCAAAAGACAATCCCAGTCCAAGGCAGCAGTCTTAGCCAGGGACAGAATGTGGAAGACACACCCTTTtagtttgtgtttgtctgtctggtGTAAGTATGTGGATGTGTGCATACAAGTCTGTCTGGCTTTACTgatgtgagagaaagaggggtTTTCCTAGTTGCCCAGTTTCTTGTTGTATTTCCATTTTTGGCCATCCTGATATTTAATAGCATATTAATGCTAATGCAGAGCCTGGTGGCAAAGTGGACACTCATGGACAGAGATGCTGCATTCAACTGCATTAGACACTTATTAACTgcaagaaggaaagagaagggGCATAGGGAATTTTTAGGATCTGTATGTAAAGTGCAATActgttttctccttttcatcttattgtattttttttttgtcttttgttactACACCAGTGTTTTCGTACAGACAACAACCTTGTTGGAGTTTGAGTGATTATGCAGGAGAGTTTATGAcaattattatttcaataatcaaatatatgaaaattccccatgcattttttttaatcacaaaataGCTTTGTTTGAGCTGCCAAGGCTTTGTTTGATAATAGCATCAGCTATTTACTATGAGCACCGCACTATCATCCTTTAACAGTTAGTGCTatccaagagagaaaaatgaaaaactctcATAGAGTTAAAATGCTGTGATCTTTTATGGTGTCTGTTGTTCCAATGTTATATCTTGATTGCAAAAATGTAATGagtgtttttaattacacattGTTTAGAAACGCAACAGGCCTTGTTACAAATTGAGACTCAGAAATGATGTCGTTTGCCTGTTCTCAATGTTTTGCTCAGTTTCAGACATTTGTTTATACCTCCAAAATTtagattttgtttctttttccttttttaattttttttatttacatttctgcaGCAGGAAGCACTGGTTATATTTTTGTCCCATCCCAAACTTTTGTCCTACCCACAtcgtttcttttttgttttattaagttGTAAATATGATTTGgcaaggagattttttttttttaaactaaaactcTTATCTGACATAAAATTACATCACCCCATATTGGGGATAATTGGAGGGATGTTAAAGTGATTAATTATTTGTATGGTATTTTACAATTTGCATTTCAAATAAATCTTTCAATTTTTATGA

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0001501 skeletal system development biological_process
GO:0085029 extracellular matrix assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG:

id description
K06484 ITGA5, CD49e; integrin alpha 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303370 lncRNA upstream 12640 17058192 ~ 17058497 (+) True G256322
TU303367 lncRNA upstream 16046 17054866 ~ 17055091 (+) True G256319
XR_003403182.2 lncRNA upstream 20206 17048077 ~ 17050931 (+) True LOC113530783
TU303360 lncRNA upstream 22045 17048904 ~ 17049092 (+) False LOC113530783
TU303285 lncRNA upstream 147734 16922911 ~ 16923403 (+) True G256239
TU303434 lncRNA downstream 50750 17175701 ~ 17176152 (+) False LOC113530386
TU303435 lncRNA downstream 50750 17175701 ~ 17176062 (+) False LOC113530386
TU303458 lncRNA downstream 72728 17197679 ~ 17197916 (+) True G256405
TU303461 lncRNA downstream 115937 17240888 ~ 17241933 (+) True G256408
TU303485 lncRNA downstream 141559 17266510 ~ 17266732 (+) True G256425
XM_026920744.2 mRNA upstream 36861 17005065 ~ 17034276 (+) True csrnp2
XM_026920841.2 mRNA upstream 110571 16936562 ~ 16960566 (+) True tfcp2
XM_034311786.1 mRNA upstream 157065 16877764 ~ 16914072 (+) False pou6f1
XM_026920984.2 mRNA downstream 47241 17172192 ~ 17175513 (+) True slc48a1a
XM_026920301.2 mRNA downstream 50756 17175707 ~ 17188377 (+) True LOC113530386
XM_034312245.1 mRNA downstream 52897 17177848 ~ 17188377 (+) False LOC113530386
XM_026920352.2 mRNA downstream 64928 17189879 ~ 17194246 (+) True hrct1
XM_026920718.2 mRNA downstream 302351 17427302 ~ 17627058 (+) True plxna2
TU303060 other upstream 562757 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 674925 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 676137 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 841731 16210650 ~ 16229406 (+) False LOC113530889
TU302132 other upstream 1903469 15117112 ~ 15167668 (+) False rps21
TU304341 other downstream 1754617 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 1907966 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 2353351 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 3265858 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 3385293 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile