cltrn (tmem27)


Basic Information

Item Value
gene id cltrn
gene name tmem27
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24299596 ~ 24306661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921040.2
acacttcactctcaGTTCAGCTAcgaccttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagaaaaagGGAGGAAAAAGTTTGGAATAGAAGGATAATAggaaaacagaagaagagatGAAGCTGtggattatgtgtgtgttgtgtgtggctCCAGCTCTTGTGGGCAGCAAATGTGTGTCAGaTTCGCAGCGCGATGGCTATCTCGTCAGGCTCAGTATTAAAGCAGCGCTGGGAGATAATGCTTATGACTGGGACGAGAGCGAGATGTTCTTCTTCAGAGCGACGGTGGCTTTCGCCATGAGGAGCTACACCAACGATCAGACCTACAATGTCTCAAACATCTTGGTGTGTAACGAAACAGAGCGAGTGTCGTTTTGGTTCGTGGTGATATCACCGAGCGACAGCTCTCAGCTCATTCCCAAACAAACGGTGGAGAAAGCCATcagGAATTCGAGGAATCGGATCAATAACGCGTTCCTGCTGACGGATCAGACGCTGGAGTTTGTGGGAATAAACCCGACTCTGGCGGCTCCGATGCAGTACGACACACAGCCGTGGCTCATCGTGTTCGGCGTGGTGATGGGACTCGTGTGTGTCGGCATCATCGCCATGCTCTTCACCTCCTTCATCCAGAGGacacacgGGCGAAGCGCAAACAGTccgaggaagaggaggaaaccggagaaagAGTGACAGGAAACGGAATAATGTGTGAGATTCTGAAGGAGAAAGACGGCTTTAACAACCGAGGATTTGCTGATGATGATCGCTTCACCAAGCTCTAAACCCTGACGGACTTTAACATTTATCAGGAATGTAATGCAAAAGTTTGAGCTAATGTTACTAGTAACAGCAGTCCGGCTTTACTCGCCTTTATTTCACactcagctccagaattattggcacccttggtaaatatGGGTAAAAAGTAAATATGGCACGATAccacttttcttttctgatactgaGACCTTGAGCATCAGTCGACTCCAAGatggttttctttaaaaacttcaCAGTTACATtcttacacacaaaaacacttccTGTACTTTACACCAATcccaacaacagaaaaaaaacagtcatgtctctttatatgtaaatgtttccagttccaaaaataaattt
>XM_034311816.1
acttcactctcaGTTCAGCTAcgaccttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagaaaaagGGAGGAAAAAGTTTGGAATAGAAGGATAATAggaaaacagaagaagagatGAAGCTGtggattatgtgtgtgttgtgtgtggctCCAGCTCTTGTGGGCAGCAAATGTGTGTCAGaTTCGCAGCGCGATGGCTATCTCGTCAGGCTCAGTATTAAAGCAGCGCTGGGAGATAATGCTTATGACTGGGACGAGAGCGAGATGTTCTTCTTCAGAGCGACGGTGGCTTTCGCCATGAGGAGCTACACCAACGATCAGACCTACAATGTCTCAAACATCTTGGTGTGTAACGAAACAGAGCGAGTGTCGTTTTGGTTCGTGGTGATATCACCGAGCGACAGCTCTCAGCTCATTCCCAAACAAACGGTGGAGAAAGCCATcagGAATTCGAGGAATCGGATCAATAACGCGTTCCTGCTGACGGATCAGACGCTGGAGTTTGTGGGAATAAACCCGACTCTGGCGGCTCCGATGCAGTACGACACACAGCCGTGGCTCATCGTGTTCGGCGTGGTGATGGGACTCGTGTGTGTCGGCATCATCGCCATGCTCTTCACCTCCTTCATCCAGAGGacacGGGCGAAGCGCAAACAGTccgaggaagaggaggaaaccggagaaagAGTGACAGGAAACGGAATAATGTGTGAGATTCTGAAGGAGAAAGACGGCTTTAACAACCGAGGATTTGCTGATGATGATCGCTTCACCAAGCTCTAAACCCTGACGGACTTTAACATTTATCAGGAATGTAATGCAAAAGTTTGAGCTAATGTTACTAGTAACAGCAGTCCGGCTTTACTCGCCTTTATTTCACactcagctccagaattattggcacccttggtaaatatGGGTAAAAAGTAAATATGGCACGATAccacttttcttttctgatactgaGACCTTGAGCATCAGTCGACTCCAAGatggttttctttaaaaacttcaCAGTTACATtcttacacacaaaaacacttccTGTACTTTACACCAATcccaacaacagaaaaaaaacagtcatgtctctttatatgtaaatgtttccagttccaaaaat

Function

symbol description
tmem27 collectrin

NR:

description
PREDICTED: collectrin-like

GO:      GO:0070011

KEGG:

id description
K20004 TMEM27; collectrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921040.2 True 1138 mRNA 0.46 6 24299596 24306661
XM_034311816.1 False 1128 mRNA 0.46 6 24299598 24306655

Neighbor

gene id symbol gene type direction distance location
LOC113530931 LOC108275754 coding upstream 111225 24166720 ~ 24188371 (+)
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding upstream 168489 24091122 ~ 24131107 (+)
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding upstream 244072 24048016 ~ 24055524 (+)
mcoln3b mcoln3 coding upstream 331710 23951660 ~ 23967886 (+)
syde2 syde2 coding upstream 377620 23888706 ~ 23921976 (+)
mdp1 mdp1 coding downstream 5565 24312226 ~ 24315467 (+)
LOC113530532 LOC108275719 coding downstream 214218 24520879 ~ 24528915 (+)
LOC117599218 LOC108275604,LOC102207396 coding downstream 292497 24599158 ~ 24613089 (+)
LOC113530697 NA coding downstream 311959 24618620 ~ 24623805 (+)
LOC113530267 LOC108275728 coding downstream 373959 24680620 ~ 24689895 (+)
G260441 NA non-coding upstream 128567 24170370 ~ 24171029 (+)
G260409 NA non-coding upstream 137956 24158866 ~ 24161640 (+)
G260434 NA non-coding upstream 153257 24145990 ~ 24146339 (+)
G260431 NA non-coding upstream 158977 24135794 ~ 24140619 (+)
G260430 NA non-coding upstream 167638 24131718 ~ 24131958 (+)
LOC113530917 NA non-coding downstream 42316 24348977 ~ 24351472 (+)
G260592 NA non-coding downstream 98383 24405044 ~ 24430691 (+)
G260632 LOC108275555 non-coding downstream 170905 24477566 ~ 24479800 (+)
LOC117599259 NA non-coding downstream 216597 24523258 ~ 24528915 (+)
G260623 tcp1 non-coding downstream 221591 24528252 ~ 24604059 (+)
G260483 LOC108275756 other upstream 30329 24268577 ~ 24269267 (+)
G260415 NA other upstream 266872 24032227 ~ 24032724 (+)
G259993 NA other upstream 910282 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 915943 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 1619054 22671398 ~ 22680542 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 93923 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 318276 24624937 ~ 24636129 (+)

Expression


Co-expression Network