G263117


Basic Information

Item Value
gene id G263117
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3362370 ~ 3414133 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU311782
ctcactcactcactcacaacCTCTTACATGTATGAGATCCACTTTCTGCCATAGAGACAGCACTTACACAGTAACACagatccaaaaataaaaataacatttccaCAATATGTATCATATTTAGATTAGTTGTGCCAGCAAATCTCAGGAAAAAAAGTACACAATTTCCCTCTTAACATCTAAGATATGTCTGGTGCCTGATGCTtgcttttttaaagttttgcaCTGGATCTACAAAGCTAAGAATCTGATCTCGAGCACTGTTATCTGTATCGGAAAAGACAATGTCATATCGTGTCACCTCTACATTTCACTCGTGTGACTGATGCTTTTCTCTGAACAGCTGAGACGGAAAGAACAGAGCAGTTTAGAAATTAAGGATCTTGCTCAAGAACTCAACACAGTGGCAGTTCAGCTGtaatgggatttgaactcatagccttctgatcagtagcccaaagccttaCTCAGTGAGCCTCCACTTCCATCTTTCACGTACTTGTTTTGCATTGTTAAATTCTGTAATCtcctttaaaaaagatttttaggGAGACCAAAATAAATTATGCCAAATTACAAAcgttaatataaaaaatgtattctgaTTGTATTAGATGGCCACCTCTAAATCATTTCTCTGTTCAGCTACATGGTGGACTTTAATTCATGTTTATAGCCAACATGAAGTcccactgtgtcctaaaccacatcactGAAGAAATGGATGTGGTTTGAGGCTCATATTTGCAGAAAAGGTTTTTAATGCGATAagatttattatgttttaactAAAGAAACAATCATCGGCTATGAAATTATGTCTTGTTGTAAGAGGAAAGTTGCGTACAAGtgaaaagaattaaaagaagATAAAATTGAATGATCTTAATGTCCCATGAGACGCATGCTTATTGACATGCAATTTATCACTGACGTATTATCGATATTTCTCTACCATGTCCAGCTGAACTTAGCAGAGCttcaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagacacagaaaaacGAAAACGATGACAAATGCAAAACAGAGAGACGCTTCAAAACCGAGCCAGACTGCTTATAGAGGCCTTAAATCAATTTGACATGGAGGAACAAAAAGGGCTGTGCAATGCTAATCTATCTGCCTTAATCCCACTGCTGCGAGATCCTTTTGAAATTCACATTCAGTGCctaatacaaaaacaaataaaaccttctttctttcactaATCAGCTTGCCCTTCATCGTGCCCTTTCTCAAGCAGTCAAAGAAGGATTTTTTGACAAAGTATCTTAATCCATTGTTTTTGTTCATAAAACAGTGATACACTGTCAACACAACTGacacttttgcttttcagtgacAAAGTCATTCTTGTCTTGAAAATTGCCAATCCAGTTTCCATATCCTGGCCACACCGCTTACATACTGAGATCATATTGTTCTGGAAGGTCTATAAAACAACAGCAGTGCCCACgagaataaaatgcattttcatcCTTTTGACAGAAATCCGACAATCCGGGGGGCAAACTGCctttttttctatgtttttttcAAGCTGTGATATGGAAAAGAAAAGGTTAAAGCAAGAACCGGGCAAGTAttagaagagaggaaaaaaatgaaaggtggaaaaaaagctTGCACAGAAACACTCTGATTGTTTCTCAACCATATGCCGATACCCTTAAGACACCATGTGCTTTGGCTTTGAAAGCTTTCGCTGCCGATTCCCCATCTGAAACCCAAACCGCTCAGCAACAATACCtctcgaaaaaaaaaacacgaggAAAAAGAGGGGGGAGAAATCCATTATCGATTTTAGCTTGTTTGGGgataaagaggaaagaaaacacagtaaacacactgatAACATAATGCTCTTTAGAGTCAGGAAGTGAAACggaataataatttaatgacTACCTTCGTAAAAACAGTAGCATGAAGGAAACACACAGCTGCAATACACATTATAGTTCCAGTGGTGAATGTAGTGTAATGGTGAATAatgcttacattatagcagctataaccgGTCGTTCCCTCACCGGCCTCTGTTATTTCCTCTCtcgtgaataaaaaaaaaaacgcagcttacCATGTTACGAGAAACTGCATGAGAAAGCATGAACTCtgaagttatagctttacctcttactgttacaaagcactgacactagagactccttctgtaaatgttatataaatgcctcctcacagaaaacatacaAATCCAAGTGTAGgctgtcactatagaaacgataacgtattatatgagaatgagtgcattaaaataaacctgtgatttgcagctgcgctactgtcacaTCTacacaacttctgaccaatcagaatcgagaacaGCAGCACGGTGGTGTAAGCATAAGAAATATCAGCACAAGTAGACAAGGTAAAAGGTCCAACTGTGACTGTCACAACCTTCCTGTCATCTTTCAGACTGACTGAACCATACACCAAATACAACCACAACAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311782 True 2529 lncRNA 0.38 2 3362370 3414133

Neighbor

gene id symbol gene type direction distance location
bhlha9 bhlha9 coding downstream 51340 3309739 ~ 3311030 (-)
wscd1b LOC108276571 coding downstream 85639 3263413 ~ 3276731 (-)
LOC117599375 LOC108277124 coding downstream 279329 3074500 ~ 3083041 (-)
LOC113544941 samsn1 coding downstream 287917 3064189 ~ 3074453 (-)
serpinh1a serpinh1a,LOC108277285,LOC108435823,LOC107743426,LOC107680328,LOC107570353,LOC107583375,LOC107653702 coding downstream 337925 3018796 ~ 3024445 (-)
nf1b LOC108276969,LOC108435812,LOC106567758 coding upstream 218025 3632158 ~ 3699612 (-)
LOC113544747 LOC108276974 coding upstream 286337 3700470 ~ 3710581 (-)
LOC113544774 LOC108276973 coding upstream 296890 3711023 ~ 3715177 (-)
ksr1a ksr1,ksr1a,LOC107741140,LOC107653729 coding upstream 301706 3715839 ~ 3750194 (-)
cuedc1a LOC108277236,LOC108435809 coding upstream 342449 3756582 ~ 3781707 (-)
G263077 NA non-coding downstream 36549 3318077 ~ 3325821 (-)
G262728 NA non-coding downstream 220702 3141027 ~ 3141668 (-)
G262681 NA non-coding downstream 337158 3024861 ~ 3025212 (-)
G262646 NA non-coding downstream 375695 2986455 ~ 2986675 (-)
G262598 NA non-coding downstream 448499 2913664 ~ 2913871 (-)
LOC113544916 NA non-coding upstream 458012 3872145 ~ 4007136 (-)
G263272 NA non-coding upstream 483714 3897847 ~ 3898067 (-)
G263397 NA non-coding upstream 697736 4111869 ~ 4112084 (-)
G263404 NA non-coding upstream 748559 4162692 ~ 4165154 (-)
G263405 NA non-coding upstream 753476 4167609 ~ 4181357 (-)
LOC113544717 LOC108276916,LOC108276915 other downstream 394188 2965655 ~ 2968182 (-)
si:ch73-1a9.3 NA other downstream 602185 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 637897 2712442 ~ 2724473 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 1581963 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1951431 1265452 ~ 1410939 (-)
akap1a NA other upstream 153286 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 638856 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 1502357 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 1619735 5033868 ~ 5157309 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 1832801 5246934 ~ 5251500 (-)

Expression


Co-expression Network