G262598


Basic Information

Item Value
gene id G262598
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2913664 ~ 2913871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU311180
GAATGCTCTTATGAGAAGGTAAGTAGTTTCTCTGATTGTTTGAATGTCAAGGTTTTGCCCATTTTCTTAAAGTGTGCAAATAATTCTGGAGGTTAGAGGATTAAATTATAGAGGATTAAATACTCAGTTAAGTCACTTTCGAgaataaaactgtgtaaaaatGGATGATGTTTGTATATCCTGAACAAAAAGGTAATGTCAGAGTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311180 True 208 lncRNA 0.33 1 2913664 2913871

Neighbor

gene id symbol gene type direction distance location
dscama dscama,LOC108277288,LOC108433273,LOC107653721,LOC107679528,LOC107758699 coding downstream 11614 2823236 ~ 2902050 (-)
LOC113544802 NA coding downstream 177697 2728907 ~ 2735967 (-)
ei24 ei24,LOC106567936,LOC106603545 coding downstream 215579 2688041 ~ 2698085 (-)
stt3a stt3a coding downstream 228011 2673851 ~ 2685653 (-)
foxred1 foxred1,LOC107758617 coding downstream 241104 2664422 ~ 2672560 (-)
tmprss2 tmprss2 coding upstream 6688 2920559 ~ 2926895 (-)
acat1 acat1,LOC107653722,LOC107565255,LOC107758700,LOC107583377,LOC107679529,LOC107743429 coding upstream 24609 2938480 ~ 2944058 (-)
mmp30 LOC108276913 coding upstream 31713 2945584 ~ 2950217 (-)
LOC113544739 LOC108276914 coding upstream 38225 2952096 ~ 2963087 (-)
LOC113544715 LOC108276915 coding upstream 60737 2974608 ~ 2977300 (-)
G262572 NA non-coding downstream 57997 2855054 ~ 2855667 (-)
LOC113544730 NA non-coding downstream 167133 2737833 ~ 2746531 (-)
G262381 NA non-coding downstream 358483 2532891 ~ 2555181 (-)
G262368 NA non-coding downstream 408856 2504583 ~ 2504808 (-)
G262144 NA non-coding downstream 722281 2191172 ~ 2191383 (-)
G262646 NA non-coding upstream 72584 2986455 ~ 2986675 (-)
G262681 NA non-coding upstream 110990 3024861 ~ 3025212 (-)
G262728 NA non-coding upstream 227156 3141027 ~ 3141668 (-)
G263077 NA non-coding upstream 404206 3318077 ~ 3325821 (-)
G263117 NA non-coding upstream 448499 3362370 ~ 3414133 (-)
si:ch73-1a9.3 NA other downstream 153479 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 189191 2712442 ~ 2724473 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 1133257 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1502725 1265452 ~ 1410939 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 1801271 1015807 ~ 1112393 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 51784 2965655 ~ 2968182 (-)
akap1a NA other upstream 653548 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 1139118 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 2002619 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 2119997 5033868 ~ 5157309 (-)

Expression


Co-expression Network