tmprss2 (tmprss2)


Basic Information

Item Value
gene id tmprss2
gene name tmprss2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2920559 ~ 2926895 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312921.1
CGCAGTGGTGTGATGGACGGGCGGATTGTCCAGCAGGCGAGGATGAGGCCCACTGCTtTCGCTTCTTTGGGCCTAATTTCATGCTGCAGAGTTTTTCAAGCGAGGACCAAAAATGGAAGGTAGTGTGTTCAGACAGGTGGGACAACAACATTGCAAAGCAAGCATGTCAGGAGATCGGATATTCCAGaTCTGACTATGTCAGCTATGGGACATTAAATCCAGGGTTCCAGCACAGCAGACGGCTACATGACCCTCAAATCTGATTACTCAAATGCACTCAGTTCTGAGCCTGTACATAGCTCTCTCTCTGACAGTGCGAGTTGCCCAACGAATGCCGCAGTGAGCCTGAAGTGTATCGATTGTGGAAGATCTGTTGCTCCTGGAACGCGTATCGTCGGAGGGCAAGTGGTGACCACCAAGGGGCGCTGGCCGTGGCAGGTCAGTCTGCAGGCAAAGGGGAATCACCTGTGCGGAGGATCAATCATCACTCCATCGTGGATCGTCACAGCCGCTCACTGCGTTCAGACACTTTCATCTCCGAGTGACTGGAAGGTGTACGCCGGATATCTGACCCTTACTCAGATGTCCTACTCCATCGGCAGCTCAGTCAGGCAGGTCATCTCTCACCCCAGCTTTGACTCCGACACCAATGACTACGATATCGCGCTGATGAAACTGTGGACGCCGCTCCAAATGTCATctAGCATCAGTCCAGTGTGCTTGCCAAACACCGGTCTCGACTTGTCAACATCAAGAACGTACTATATTACTGGATGGGGGGCGACTATGAGTCAAGGTTATGCCTCCAATGAATTACGTGAGGCTCAAGTCTCACTGATAAGCAGGACGGTGTGTAACGGCCTGCTGGTTTATAACGGCCAAATCACGGACAACATGATCTGCGCAGGCAAGCTAGAGGGTGGAGTGGACTCATGCCAGggagacaGCGGGGGTCCTCTGGTCACTTCGGAGAATTTGCTGTGGTGGCTGGTGGGGGACACTAGCTGGGGTCAGGGCTGCGCTTTGCGAAACCGGCCGGGTGTTTATGGAAATGTGACCTTCTTCCTCGACTGGATTTACACGCAAATGAAGaaATATTAATTTGGGTGAAATGGATGACGTCATGGACCTTCATTTCAGAGCAACTTCATGAAGGACAGTTTGTAGATATATTCATGTTATATCCTGTGGATTCGcagtatttctttattatttatattgatttatgcttatttttgtaatagctttttttttaaattgatttaaacTTATGTCAGATGTCTAGTTTTgaggttttaaacattttatttattgtcaaaaatgtctttaatgaGTAACCTGAAGATGTTTAGGTTGTTTTTAAGCACAATGTGTCAGACACATTCAGTCAAATGTACACATGGGTGTGTTATGCTCCAAGTAGCTTTTCAAATTTACTCAAACTTTATTTGCACAGGTTTTTTCCTCCAAACACTACCCCTGAGCACAGTAAGTTCAGAAACAGGGAGTGAGTGGCAGAGAAaacagctttgtttttcttcctgcaCTGCTAGTATCTCTCGATAAAGACAGCTTATCACGATTTATATAGCAACTGAATAGCATTTAAAATCACACTTCATCAACACAGGGTGTCATAAAATGAAACATAGCTGATaaacatttacggcatttggcagacgcccttatccagggcGACTTACAATtagctcatttatacaactgagcacaTTAATGAATATGATCATAGAATGATAGTTTTCCCACATTCCCTCTGATTCTTTGCATATCACACATTACTGCTTgctgtaaatgaattaaaaatgattatttgaatata

Function

symbol description
tmprss2 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMPRSS2 (transmembrane serine protease 2).

NR:

description
transmembrane protease serine 2-like isoform X1

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K09633 TMPRSS2; transmembrane protease serine 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312921.1 True 1840 mRNA 0.45 11 2920559 2926895

Neighbor

gene id symbol gene type direction distance location
dscama dscama,LOC108277288,LOC108433273,LOC107653721,LOC107679528,LOC107758699 coding downstream 18509 2823236 ~ 2902050 (-)
LOC113544802 NA coding downstream 184592 2728907 ~ 2735967 (-)
ei24 ei24,LOC106567936,LOC106603545 coding downstream 222474 2688041 ~ 2698085 (-)
stt3a stt3a coding downstream 234906 2673851 ~ 2685653 (-)
foxred1 foxred1,LOC107758617 coding downstream 247999 2664422 ~ 2672560 (-)
acat1 acat1,LOC107653722,LOC107565255,LOC107758700,LOC107583377,LOC107679529,LOC107743429 coding upstream 11585 2938480 ~ 2944058 (-)
mmp30 LOC108276913 coding upstream 18689 2945584 ~ 2950217 (-)
LOC113544739 LOC108276914 coding upstream 25201 2952096 ~ 2963087 (-)
LOC113544715 LOC108276915 coding upstream 47713 2974608 ~ 2977300 (-)
LOC113544865 NA coding upstream 53699 2980594 ~ 2983330 (-)
G262598 NA non-coding downstream 6688 2913664 ~ 2913871 (-)
G262572 NA non-coding downstream 64892 2855054 ~ 2855667 (-)
LOC113544730 NA non-coding downstream 174028 2737833 ~ 2746531 (-)
G262381 NA non-coding downstream 365378 2532891 ~ 2555181 (-)
G262368 NA non-coding downstream 415751 2504583 ~ 2504808 (-)
G262646 NA non-coding upstream 59560 2986455 ~ 2986675 (-)
G262681 NA non-coding upstream 97966 3024861 ~ 3025212 (-)
G262728 NA non-coding upstream 214132 3141027 ~ 3141668 (-)
G263077 NA non-coding upstream 391182 3318077 ~ 3325821 (-)
G263117 NA non-coding upstream 435475 3362370 ~ 3414133 (-)
si:ch73-1a9.3 NA other downstream 160374 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 196086 2712442 ~ 2724473 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 1140152 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1509620 1265452 ~ 1410939 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 1808166 1015807 ~ 1112393 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 38760 2965655 ~ 2968182 (-)
akap1a NA other upstream 640524 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 1126094 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 1989595 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 2106973 5033868 ~ 5157309 (-)

Expression


Co-expression Network