stt3a (stt3a)


Basic Information

Item Value
gene id stt3a
gene name stt3a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2673851 ~ 2685653 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943881.2
AAGCGCAGGTTTTACGTGGCTGGGCGGGGCTCTGGTCGCTCacagagtagtgtgtgtgtggggggaaaagTGAAGTGTGTAACAGGAGCGGAGTGGAAGTGAGCTACCGATGAAAGAAATtgATATCGAGTGTTAGCAGAGTAAAGATGACCAAGATGGGCTTCCTGCGGCTGTCCTATGAGAAACAGGACACGCTGCTCAAGCTCCTCATCCTGTCCATGGCGGCCGTGCTGTCGTTTTCCACTCGCCTTTTCTCTGTGCTGAGGTTCGAGAGTGTCATCCACGAGTTCGATCCGTATTTCAATTACCGCACCACTCGTTTCCTGGCGGAGGAGGGCTTTTACAAGTTTCACAACTGGTTCGATGACCGTGCGTGGTATCCGCTCGGCAGAATCATCGGAGGCACCATCTATCCCGGTTTGATGGTGACCTCGGCGGCCCTTTACCACATGCTGCACTTCTTCCACATCACCATCGACATccgaaatgtgtgtgtgttcctcgcACCGCTCTTCTCCTCCTTCACCGCTATCGTCACCTACCACTTCACCAAGGAGCTCAAGGACGCTGGTGCTGGACTTCTTGCCGCTGCCATGATCGCTGTTGTACCAGGATACATTTCCCGATCGGTTGCAGGCTCCTACGATAACGAAGGAATTGCTATTTTCTGCATGTTGCTGACGTACTACATGTGGATCAAGGCGGTGAAGACGGGTTCGATTTACTGGTCGTCCATCTGCGCCCTGGCGTACTTCTACATGGTGTCCTCGTGGGGAGGCTACGTGTTCCTCATCAACCTGATCCCTCTGCACGTACTGGTGCTGATGCTCACCGGACGATTCTCTCACCGCATCTATGTGGCTTACTGCACCGTGTACTGCCTGGGCACCATCCTGTCCATGCAGATCTCCTTCGTGGGATTCCAGcccGTGCAATCCTCCGAGCACATGGCTGCCTTCGGCGTGTTCGGCCTGTGTCAGATTCACGCCTTCGTGGATTACCTGCGCAGCAAACTCAACGCCCAGCAGTTCGAGATCCTCTTCAAGAGCGTCATTTCCCTGGTCGGCTTCGTGCTTCTCTCCGTCGGAGCCGTGCTCATGCTGACCGGGAAGATTTCCCCATGGACCGGCCGTTTCTACTCTCTCCTGGACCCGTCCTACGCCAAGAACAACATCCCCATCATCGCCTCCGTGTCCGAGCACCAGCCCACCACCTGGTCCTCGTATTATTTTGACCTGCAGTTGCTGGTCTTCATGTTCCCGGtGGGTCTGTATTACTGCTTCAACAACCTGTCAGACGCCAGAATTTTCATCATCATGTACGGCGTGACCAGCATGTACTTCTCAGCTGTGATGGTGCGTCTGATGCTGGTTTTGGCTCCGGTCATGTGCATCCTGTCAGGAATCGGCGTTTCTCAGGTTCTCACCACGTACATGAAGAACCTGGACGTCAGCCGACCAGACAAGAAGTCCAAGAAGCAGCAGGACTCTACCTATCCCATCAAGAATGAGGTTGCCAGCGGAATGATCCTGGTCATGGCTTTCTTCCTGATCACGTACACCTTCCACTCGACGTGGGTGACGAGCGAGGCCTATTCCTCTCCCTCCATCGTGCTCTCGGCTCGCGGAGGAGACGGCAGCCGCATCATCTTCGACGATTTCAGAGAGGCTTATTACTGGCTCAGACACAACACTCCCGAGGATGCTAAGGTCATGTCCTGGTGGGATTACGGCTATCAGATAACCGCCATGGCAAATCGGACGATTCTGGTCGACAATAACACctggaacaacacacacatctctcgaGTCGGCCAGgcgatGGCCTCCTCAGAGGAGAAGGCCTATGAGATCATGCGAGAGCTGGACGTCAGCTACGTGTTGGTGATCTTCGGAGGACTGACCGGATATTCATCAGATGACATAAATAAGTTCTTGTGGATGGTGCGTATCGGAGGCAGCACAGACACGGGGCGGCACATTCGGGAGCACGACTACTACACTCCCACCGGCGAGTTCCGCGTGGACAGGGAAGGTTCTCCGGTTCTGCTCAACTGCCTAATGTACAAGATGTGCTACTACCGCTTCGGCCAGGTCTACACCGAGGCCAAACGTCCTCCCGGTTACGACCGCGTCCGTAACGCTGAGATTGGCAACAAGGACTTCGAGCTGGACGTGCTCGAGGAGGCGTACACCACAGAGCACTGGCTGGTCAGGATATACAAGGTTAAAGACCTGGACAACCGAGGCCTCTCGCGAACGTAAAGCCCAGACActcacaattcacacacacaacgacacaaacacacagcactgaacaccttcccctGTGATCTGAAGAGCAGTGTGGATGTTTTTTATACTTCTGTTGTGATTGCAGGAAAAGATTCTATTgtcttttttatgatttataacgtggtgttagtttttttttctttggaatgAAGTGAGACTTCAAAACGTCCAGAAAACTGTCAGTATGTATTTCTGCAATCAGTGACCAACCAAATGATTTGTCTAAAAATGGGGTAATAAATGGAGTGAATGGGA

Function

symbol description
stt3a Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity. Predicted to be involved in post-translational protein modification and protein N-linked glycosylation via asparagine. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axial mesoderm; hatching gland; musculature system; notochord; and otic placode. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iw. Orthologous to human STT3A (STT3 oligosaccharyltransferase complex catalytic subunit A).

NR:

description
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0016020 membrane cellular_component
GO:0004576 oligosaccharyl transferase activity molecular_function

KEGG:

id description
K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943881.2 True 2549 mRNA 0.53 19 2673851 2685653

Neighbor

gene id symbol gene type direction distance location
foxred1 foxred1,LOC107758617 coding downstream 1291 2664422 ~ 2672560 (-)
dcps dcps coding downstream 10010 2659939 ~ 2663841 (-)
kcnj1b kcnj1,LOC108433247 coding downstream 15970 2655781 ~ 2657881 (-)
LOC117599364 kcnj1,LOC108433247 coding downstream 18987 2654404 ~ 2654864 (-)
kirrel3a kirrel3,kirrel3a,LOC107730946,LOC107758686,LOC107565265 coding downstream 221819 2329405 ~ 2452032 (-)
ei24 ei24,LOC106567936,LOC106603545 coding upstream 2388 2688041 ~ 2698085 (-)
LOC113544802 NA coding upstream 43254 2728907 ~ 2735967 (-)
dscama dscama,LOC108277288,LOC108433273,LOC107653721,LOC107679528,LOC107758699 coding upstream 137583 2823236 ~ 2902050 (-)
tmprss2 tmprss2 coding upstream 234906 2920559 ~ 2926895 (-)
acat1 acat1,LOC107653722,LOC107565255,LOC107758700,LOC107583377,LOC107679529,LOC107743429 coding upstream 252827 2938480 ~ 2944058 (-)
G262381 NA non-coding downstream 118670 2532891 ~ 2555181 (-)
G262368 NA non-coding downstream 169043 2504583 ~ 2504808 (-)
G262144 NA non-coding downstream 482468 2191172 ~ 2191383 (-)
LOC113544895 NA non-coding downstream 517299 2149653 ~ 2156552 (-)
G262033 NA non-coding downstream 579916 2050035 ~ 2093935 (-)
LOC113544730 NA non-coding upstream 52180 2737833 ~ 2746531 (-)
G262572 NA non-coding upstream 169401 2855054 ~ 2855667 (-)
G262598 NA non-coding upstream 228011 2913664 ~ 2913871 (-)
G262646 NA non-coding upstream 300802 2986455 ~ 2986675 (-)
G262681 NA non-coding upstream 339208 3024861 ~ 3025212 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 893444 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1262912 1265452 ~ 1410939 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 1561458 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 1641316 981406 ~ 1032535 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 26789 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 280002 2965655 ~ 2968182 (-)
akap1a NA other upstream 881766 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 1367336 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 2230837 4916490 ~ 4926650 (-)

Expression


Co-expression Network