G262381


Basic Information

Item Value
gene id G262381
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2532891 ~ 2555181 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310920
ctttctttttgtcctcTCCTCAAAATCACATCTTTGCccctctcctctcatctcccctttcttcctctcctctttccTCCTCTGCTGTCCTGTCCTCTtccattctcttctcttctttcctcctccAATCTATTCTCCTCTTCCCTCCCTTTTCTTCAACTCCTCTTTCCTCATGTTCTCTTCTCATCGCTCCTCTTCCCTTCTGTCCTCTCCTCTAATCTCATCTTCACTCCACTCCCCTTTCCTCCTCAACCTCTTTCCACCTCTGCTATGCTCTTCCAgtctctcctttcctcttctcctcttccttttcctcttctcctctcccctctcctcctccttcattcctctcctctctttcatGCCTGAGtagagagtgagggagtgtgtggaGGCATGAGGTGCATCATGGCCATGTGACACACTGTGAACGAGGCAGCGTGAGAAGATGCACGAGCTGTTACGACTCACAACTACCGGCAAAACAGTAACGCAGAATCTACAGAAGAGATATCGGTTTCTCCAGCCCATGCTGCCTGCACCACTGCTTCCTCCTCTGCATTTCCACTTTCGtgaagGTGCCAACATTTTCCTTATGACTTCTCGGTCTTCTTGTACGAGCGACAGCAGAACATCTGCCTTATCACCTTTCCTCTCTATTGGAATGAACGCACCAAACCTTCAATCCAATCTACAGGCTCATCCGTTGGACAAATTTCTCACAACTTGGTGCCGTGATCCGGATGGCACGTTAACACCGAACTCAGAAAACTGAGGTTATTATCCCTTGTTTGGGAGTTTTTGGATGGACAGTGTTTGAATGTTTAAGTATCATTTTGTATTAAGCTGTAGTAAGTAAATGTCATAGttttggcctgttttttttttttttttttttaagggctAAGTGCTATGATTACACATTATCACCCAAaatgtttttggtttggttGTGAAGAATGATGTAATCTATTCTAACCAAACTGTTGATGACATAAAAACTTGGCAATGTACTCAGCCTTTTCTCCAGTAAATACACATCACTGGCAGCCACCGTTGCAAATTCAGGATGACTGTAATTGATATTACAGGATTTCCAATTTGAATAGGTGTTGATCAGAGGAGGAGGTTCCCTTCTTTTTGGTTTTTTAAGTGAGTGAAATTTTGAGCCTGACTGTATGAAAAGCGTTGAGTTGTGAGTGACTGCCATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310920 True 1212 lncRNA 0.44 2 2532891 2555181

Neighbor

gene id symbol gene type direction distance location
kirrel3a kirrel3,kirrel3a,LOC107730946,LOC107758686,LOC107565265 coding downstream 80859 2329405 ~ 2452032 (-)
smfn rexo2,LOC107730958 coding downstream 223868 2304241 ~ 2309023 (-)
LOC113544897 LOC108276559,LOC108433260,LOC107730975,LOC107679534,LOC107688917,LOC107583395,LOC107758678,LOC107565277 coding downstream 247816 2240891 ~ 2285075 (-)
gramd1ba LOC108277131,LOC108433258 coding downstream 300107 2158864 ~ 2232784 (-)
LOC117599398 LOC108276673 coding downstream 390561 2141227 ~ 2142330 (-)
LOC117599364 kcnj1,LOC108433247 coding upstream 99223 2654404 ~ 2654864 (-)
kcnj1b kcnj1,LOC108433247 coding upstream 100600 2655781 ~ 2657881 (-)
dcps dcps coding upstream 104758 2659939 ~ 2663841 (-)
foxred1 foxred1,LOC107758617 coding upstream 109241 2664422 ~ 2672560 (-)
stt3a stt3a coding upstream 118670 2673851 ~ 2685653 (-)
G262368 NA non-coding downstream 28083 2504583 ~ 2504808 (-)
G262144 NA non-coding downstream 341508 2191172 ~ 2191383 (-)
LOC113544895 NA non-coding downstream 376339 2149653 ~ 2156552 (-)
G262033 NA non-coding downstream 438956 2050035 ~ 2093935 (-)
LOC117599368 NA non-coding downstream 661971 1867804 ~ 1870920 (-)
LOC113544730 NA non-coding upstream 182652 2737833 ~ 2746531 (-)
G262572 NA non-coding upstream 299873 2855054 ~ 2855667 (-)
G262598 NA non-coding upstream 358483 2913664 ~ 2913871 (-)
G262646 NA non-coding upstream 431274 2986455 ~ 2986675 (-)
G262681 NA non-coding upstream 469680 3024861 ~ 3025212 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 752484 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1121952 1265452 ~ 1410939 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 1420498 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 1500356 981406 ~ 1032535 (-)
si:ch73-1a9.3 NA other upstream 124494 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 157261 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 410474 2965655 ~ 2968182 (-)
akap1a NA other upstream 1012238 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 1497808 4052989 ~ 4066383 (-)

Expression


Co-expression Network