LOC117599364 (kcnj1,LOC108433247)


Basic Information

Item Value
gene id LOC117599364
gene name kcnj1,LOC108433247
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2654404 ~ 2654864 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312726.1
TCAATGTTGACTTCCTGGTGGATGCTGGCAAGGACAACCTCTTCTTCGTTTGTCCGCTGACACTGTACCATGTTATTGACAGTTCTAGTCCTTTTTCAGAGATGACTGCAGATACACTTCAGCAGCAGGACATTGAACTGGTGGTCTTCTTGGAGGGCATGGCTGAATCCACAAGTTCCTCGTGCCAGGTTCGCACGTCCTACATCCCATGTGAGATCCAGTGGGGTTACTGCTTCCTGCCCATAATCTCCCGAACTAAAGGGGGCAAATACCGTGTCGATTTCTCTAATTTCTCCAAAACCATTCCAGTAGCCACACCTCACTGCCCCAGCTGCTATCTAAATGAACCAAACAAAGATCTTGTACTTCACCAGCATGGACAACAAGGCATCAACAATCCTGGTTTTGAGGTAGTTAGTACTGAAGATTTGGTGGACAATGTGCAAATGTGACGTAGATGg

Function

symbol description
kcnj1 Enables phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within several processes, including regulation of G-protein activated inward rectifier potassium channel activity; renal sodium ion absorption; and tissue homeostasis. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in plasma membrane. Implicated in Bartter disease type 2.

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312726.1 True 461 mRNA 0.47 1 2654404 2654864

Neighbor

gene id symbol gene type direction distance location
kirrel3a kirrel3,kirrel3a,LOC107730946,LOC107758686,LOC107565265 coding downstream 202372 2329405 ~ 2452032 (-)
smfn rexo2,LOC107730958 coding downstream 345381 2304241 ~ 2309023 (-)
LOC113544897 LOC108276559,LOC108433260,LOC107730975,LOC107679534,LOC107688917,LOC107583395,LOC107758678,LOC107565277 coding downstream 369329 2240891 ~ 2285075 (-)
gramd1ba LOC108277131,LOC108433258 coding downstream 421620 2158864 ~ 2232784 (-)
LOC117599398 LOC108276673 coding downstream 512074 2141227 ~ 2142330 (-)
kcnj1b kcnj1,LOC108433247 coding upstream 917 2655781 ~ 2657881 (-)
dcps dcps coding upstream 5075 2659939 ~ 2663841 (-)
foxred1 foxred1,LOC107758617 coding upstream 9558 2664422 ~ 2672560 (-)
stt3a stt3a coding upstream 18987 2673851 ~ 2685653 (-)
ei24 ei24,LOC106567936,LOC106603545 coding upstream 33177 2688041 ~ 2698085 (-)
G262381 NA non-coding downstream 99223 2532891 ~ 2555181 (-)
G262368 NA non-coding downstream 149596 2504583 ~ 2504808 (-)
G262144 NA non-coding downstream 463021 2191172 ~ 2191383 (-)
LOC113544895 NA non-coding downstream 497852 2149653 ~ 2156552 (-)
G262033 NA non-coding downstream 560469 2050035 ~ 2093935 (-)
LOC113544730 NA non-coding upstream 82969 2737833 ~ 2746531 (-)
G262572 NA non-coding upstream 200190 2855054 ~ 2855667 (-)
G262598 NA non-coding upstream 258800 2913664 ~ 2913871 (-)
G262646 NA non-coding upstream 331591 2986455 ~ 2986675 (-)
G262681 NA non-coding upstream 369997 3024861 ~ 3025212 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 873997 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1243465 1265452 ~ 1410939 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 1542011 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 1621869 981406 ~ 1032535 (-)
si:ch73-1a9.3 NA other upstream 24811 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 57578 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 310791 2965655 ~ 2968182 (-)
akap1a NA other upstream 912555 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 1398125 4052989 ~ 4066383 (-)

Expression


Co-expression Network