G262646


Basic Information

Item Value
gene id G262646
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2986455 ~ 2986675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU311236
agttttataaggaaatgagctggaagtgttactgagcatcttgcagaagcagccacagttcttctggagactttgactgtcgactcgcttcttatttctgcagcgaaacccagcagccttcattatgttttttgtctgaaaagtgtctcttatgtaatctgctgctttctttactgacatacaaacatttttctgtaacatctgattttgtgctggaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311236 True 221 lncRNA 0.39 1 2986455 2986675

Neighbor

gene id symbol gene type direction distance location
LOC113544865 NA coding downstream 3125 2980594 ~ 2983330 (-)
LOC113544715 LOC108276915 coding downstream 9155 2974608 ~ 2977300 (-)
LOC113544739 LOC108276914 coding downstream 23368 2952096 ~ 2963087 (-)
mmp30 LOC108276913 coding downstream 36238 2945584 ~ 2950217 (-)
acat1 acat1,LOC107653722,LOC107565255,LOC107758700,LOC107583377,LOC107679529,LOC107743429 coding downstream 42397 2938480 ~ 2944058 (-)
LOC113544733 mmp13 coding upstream 2037 2988712 ~ 2991334 (-)
acer3 acer3,LOC107680329,LOC107653723,LOC107758701,LOC107743427 coding upstream 17029 3003704 ~ 3013091 (-)
LOC113544923 tsku coding upstream 27232 3013907 ~ 3016173 (-)
serpinh1a serpinh1a,LOC108277285,LOC108435823,LOC107743426,LOC107680328,LOC107570353,LOC107583375,LOC107653702 coding upstream 32121 3018796 ~ 3024445 (-)
LOC113544941 samsn1 coding upstream 77514 3064189 ~ 3074453 (-)
G262598 NA non-coding downstream 72584 2913664 ~ 2913871 (-)
G262572 NA non-coding downstream 130788 2855054 ~ 2855667 (-)
LOC113544730 NA non-coding downstream 239924 2737833 ~ 2746531 (-)
G262381 NA non-coding downstream 431274 2532891 ~ 2555181 (-)
G262368 NA non-coding downstream 481647 2504583 ~ 2504808 (-)
G262681 NA non-coding upstream 38186 3024861 ~ 3025212 (-)
G262728 NA non-coding upstream 154352 3141027 ~ 3141668 (-)
G263077 NA non-coding upstream 331402 3318077 ~ 3325821 (-)
G263117 NA non-coding upstream 375695 3362370 ~ 3414133 (-)
LOC113544916 NA non-coding upstream 885470 3872145 ~ 4007136 (-)
LOC113544717 LOC108276916,LOC108276915 other downstream 18273 2965655 ~ 2968182 (-)
si:ch73-1a9.3 NA other downstream 226270 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 261982 2712442 ~ 2724473 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 1206048 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1575516 1265452 ~ 1410939 (-)
akap1a NA other upstream 580744 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 1066314 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 1929815 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 2047193 5033868 ~ 5157309 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 2260259 5246934 ~ 5251500 (-)

Expression


Co-expression Network