mmp30 (LOC108276913)


Basic Information

Item Value
gene id mmp30
gene name LOC108276913
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2945584 ~ 2950217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943899.2
aactcatcatcatcCCTCCAGGACTGCAGAAGAAGAGAGCTTGGAGATGATGGACACAGCCGTTCTTGTCCTGACACTCACAGCATGTCTGGTGCTTTGCACTGGAGCCCCTGCGACGTCCACAGTGGATCAGGAGAAAGCTGAGGAATACCTGAAGCAGTTCTACTCTGATCCCAAGGCTCCATCCGTCAGCGGGAGACGAGTGAAAGTGCAGGACTTTGAGACCATCCTGAAGCAAATGCAGGAGTTTTTCAGGCTCCAGGTGACGGGCAAGCTGGACACGAACACCATCGAGGTGATGAAGAAGCCACGCTGTGGTGTTTCCGATGTTTCCAATTATGGACATTTCAGTGGCAAGCCCAGATGGGATAAGAAGACCATTACATACAGAATAACTGAGTACACACCAGATCTGAGCCAGAGGGAAGTGGATGCCACGATCGCTCAGGCGTTCAAGCTCTACAGCGACGTCACTCCGCTCGACTTTAAGCAGATCTACAGTGGCACGGCAGACATCATGATTCTCTTCAAAGCCAGAAATCATGGAGACTTTTACCCATTCGATGGGCAGGGCGGTGTTCTGGCTCACGCCATGTCTCCTGGTCCTAATGACGGAGGTGATGCACATTTTGATGAGGATGAGAAATGGACTCTGAGCTCAGCAGGTGTGAACTTGCTCTTGGTCGCTGCCCATGAGTTCGGCCACGCGCTAGGACTGGATCACTCACGAGATCCCTCCGCTCTCATGTACCCTACATACAAATACGTCAACACTCATGGTTATCAGCTGCCTCTGGACGATAAACAAGGAATCCAGGCGCTCTATGGTGCTCATCAATCCCCAAATCCTCAACCGCAACCCAAACCACAACCTCAACCAAATCCACAACCAGGAGCAAACCCACCAGCACGATGCAACCGGGACTTGGTTTTTGATGCTGCAACCAGCATAAGTGGAGAGCTTTACTTCTTCAAGAATGACTATTACTGGAAGAAAAGCACCCTGCTGAAAGGAATTCCACAGACTCTAATCAGGTCCACGTGGCCCTCCATCACGTCTGTCGATGCAGCTTACGAGCTCAGAGCAAAACGCATCAGTTTCTTTTTCAAAGGTCAGTACTACTGGGGTGTGAAAGCGACCTCCATCTTACCCGGATATCCGAAGCACATTTCACAGTTTGGCTTTCCGGCATCAGTCACGAAGATCGACTCTGCTGTGCACGTGGTCTCAACGAGGCGCACTCTGTTCTTTACTGGTGATAAATATTGGAgCTTTAATGAGAACACTGGAAAGATGGACGCTGGTTTCCCCAAATCCATTCAGGTAGATTTCCCGGGTATCGGCACCAAAGTGGACGCTGCTTTTGAGAACTACGGTTTCCTGTATTTCTCTGATGGAGCCAGACAAACAGAATACAACTACAGGACCAGAACCGTGAATCGTGTGCTTCTGAACTACGGATGGCTGAACTGCTACTGAGCCAAATGTCATGAATTATATATTCTTAagtttgatataaatatttcataactgAACATCTATAGAGCTCATCTCTGTCTACCTGGATGTATGAGCAATATTTTGTTatcataattttcataaaatcAGTAGGCCTTAAAGGGGCAGTATGCAATTTTCAACTTCTCTCCAAAATCACACCTTATTAACTAGTGCATTATATTTAAAGTGTTGCCATTTTATATTCCAAAAGcatagtattatatatattatctttgttaatgtttatatatatttttaaaacattacacactgcacctctaTACATTTTTCTACTGTAAATAAAActctttttaaaggaaaaa

Function

NR:

description
collagenase 3-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943899.2 True 1824 mRNA 0.46 10 2945584 2950217

Neighbor

gene id symbol gene type direction distance location
acat1 acat1,LOC107653722,LOC107565255,LOC107758700,LOC107583377,LOC107679529,LOC107743429 coding downstream 1526 2938480 ~ 2944058 (-)
tmprss2 tmprss2 coding downstream 18689 2920559 ~ 2926895 (-)
dscama dscama,LOC108277288,LOC108433273,LOC107653721,LOC107679528,LOC107758699 coding downstream 43534 2823236 ~ 2902050 (-)
LOC113544802 NA coding downstream 209617 2728907 ~ 2735967 (-)
ei24 ei24,LOC106567936,LOC106603545 coding downstream 247499 2688041 ~ 2698085 (-)
LOC113544739 LOC108276914 coding upstream 1879 2952096 ~ 2963087 (-)
LOC113544715 LOC108276915 coding upstream 24391 2974608 ~ 2977300 (-)
LOC113544865 NA coding upstream 30377 2980594 ~ 2983330 (-)
LOC113544733 mmp13 coding upstream 38495 2988712 ~ 2991334 (-)
acer3 acer3,LOC107680329,LOC107653723,LOC107758701,LOC107743427 coding upstream 53487 3003704 ~ 3013091 (-)
G262598 NA non-coding downstream 31713 2913664 ~ 2913871 (-)
G262572 NA non-coding downstream 89917 2855054 ~ 2855667 (-)
LOC113544730 NA non-coding downstream 199053 2737833 ~ 2746531 (-)
G262381 NA non-coding downstream 390403 2532891 ~ 2555181 (-)
G262368 NA non-coding downstream 440776 2504583 ~ 2504808 (-)
G262646 NA non-coding upstream 36238 2986455 ~ 2986675 (-)
G262681 NA non-coding upstream 74644 3024861 ~ 3025212 (-)
G262728 NA non-coding upstream 190810 3141027 ~ 3141668 (-)
G263077 NA non-coding upstream 367860 3318077 ~ 3325821 (-)
G263117 NA non-coding upstream 412153 3362370 ~ 3414133 (-)
si:ch73-1a9.3 NA other downstream 185399 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 221111 2712442 ~ 2724473 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 1165177 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1534645 1265452 ~ 1410939 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 1833191 1015807 ~ 1112393 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 15438 2965655 ~ 2968182 (-)
akap1a NA other upstream 617202 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 1102772 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 1966273 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 2083651 5033868 ~ 5157309 (-)

Expression


Co-expression Network