RNA id: XM_026943899.2


Basic Information

Item Value
RNA id XM_026943899.2
length 1824
RNA type mRNA
GC content 0.46
exon number 10
gene id mmp30
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2945584 ~ 2950217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aactcatcatcatcCCTCCAGGACTGCAGAAGAAGAGAGCTTGGAGATGATGGACACAGCCGTTCTTGTCCTGACACTCACAGCATGTCTGGTGCTTTGCACTGGAGCCCCTGCGACGTCCACAGTGGATCAGGAGAAAGCTGAGGAATACCTGAAGCAGTTCTACTCTGATCCCAAGGCTCCATCCGTCAGCGGGAGACGAGTGAAAGTGCAGGACTTTGAGACCATCCTGAAGCAAATGCAGGAGTTTTTCAGGCTCCAGGTGACGGGCAAGCTGGACACGAACACCATCGAGGTGATGAAGAAGCCACGCTGTGGTGTTTCCGATGTTTCCAATTATGGACATTTCAGTGGCAAGCCCAGATGGGATAAGAAGACCATTACATACAGAATAACTGAGTACACACCAGATCTGAGCCAGAGGGAAGTGGATGCCACGATCGCTCAGGCGTTCAAGCTCTACAGCGACGTCACTCCGCTCGACTTTAAGCAGATCTACAGTGGCACGGCAGACATCATGATTCTCTTCAAAGCCAGAAATCATGGAGACTTTTACCCATTCGATGGGCAGGGCGGTGTTCTGGCTCACGCCATGTCTCCTGGTCCTAATGACGGAGGTGATGCACATTTTGATGAGGATGAGAAATGGACTCTGAGCTCAGCAGGTGTGAACTTGCTCTTGGTCGCTGCCCATGAGTTCGGCCACGCGCTAGGACTGGATCACTCACGAGATCCCTCCGCTCTCATGTACCCTACATACAAATACGTCAACACTCATGGTTATCAGCTGCCTCTGGACGATAAACAAGGAATCCAGGCGCTCTATGGTGCTCATCAATCCCCAAATCCTCAACCGCAACCCAAACCACAACCTCAACCAAATCCACAACCAGGAGCAAACCCACCAGCACGATGCAACCGGGACTTGGTTTTTGATGCTGCAACCAGCATAAGTGGAGAGCTTTACTTCTTCAAGAATGACTATTACTGGAAGAAAAGCACCCTGCTGAAAGGAATTCCACAGACTCTAATCAGGTCCACGTGGCCCTCCATCACGTCTGTCGATGCAGCTTACGAGCTCAGAGCAAAACGCATCAGTTTCTTTTTCAAAGGTCAGTACTACTGGGGTGTGAAAGCGACCTCCATCTTACCCGGATATCCGAAGCACATTTCACAGTTTGGCTTTCCGGCATCAGTCACGAAGATCGACTCTGCTGTGCACGTGGTCTCAACGAGGCGCACTCTGTTCTTTACTGGTGATAAATATTGGAgCTTTAATGAGAACACTGGAAAGATGGACGCTGGTTTCCCCAAATCCATTCAGGTAGATTTCCCGGGTATCGGCACCAAAGTGGACGCTGCTTTTGAGAACTACGGTTTCCTGTATTTCTCTGATGGAGCCAGACAAACAGAATACAACTACAGGACCAGAACCGTGAATCGTGTGCTTCTGAACTACGGATGGCTGAACTGCTACTGAGCCAAATGTCATGAATTATATATTCTTAagtttgatataaatatttcataactgAACATCTATAGAGCTCATCTCTGTCTACCTGGATGTATGAGCAATATTTTGTTatcataattttcataaaatcAGTAGGCCTTAAAGGGGCAGTATGCAATTTTCAACTTCTCTCCAAAATCACACCTTATTAACTAGTGCATTATATTTAAAGTGTTGCCATTTTATATTCCAAAAGcatagtattatatatattatctttgttaatgtttatatatatttttaaaacattacacactgcacctctaTACATTTTTCTACTGTAAATAAAActctttttaaaggaaaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311180 lncRNA downstream 31713 2913664 ~ 2913871 (-) True G262598
TU311153 lncRNA downstream 89917 2855054 ~ 2855667 (-) True G262572
TU311021 lncRNA downstream 185399 2695855 ~ 2760185 (-) False si:ch73-1a9.3
TU311236 lncRNA upstream 36238 2986455 ~ 2986675 (-) True G262646
TU311284 lncRNA upstream 74644 3024861 ~ 3025212 (-) True G262681
TU311337 lncRNA upstream 190810 3141027 ~ 3141668 (-) True G262728
TU311741 lncRNA upstream 367860 3318077 ~ 3325821 (-) True G263077
TU311782 lncRNA upstream 412153 3362370 ~ 3414133 (-) True G263117
XM_026943901.2 mRNA downstream 1526 2938480 ~ 2944058 (-) True acat1
XM_034312921.1 mRNA downstream 18689 2920559 ~ 2926895 (-) True tmprss2
XM_034312923.1 mRNA downstream 43534 2823236 ~ 2902050 (-) True dscama
XM_026943987.2 mRNA downstream 52906 2824681 ~ 2892678 (-) False dscama
XM_026943988.2 mRNA downstream 185426 2757070 ~ 2760158 (-) False si:ch73-1a9.3
XM_026943674.2 mRNA upstream 1879 2952096 ~ 2963087 (-) True LOC113544739
XM_034312909.1 mRNA upstream 2535 2952752 ~ 2963087 (-) False LOC113544739
XM_026943635.2 mRNA upstream 15438 2965655 ~ 2968182 (-) True LOC113544717
XM_026943634.2 mRNA upstream 24391 2974608 ~ 2977300 (-) True LOC113544715
XM_026943902.2 mRNA upstream 30377 2980594 ~ 2983330 (-) True LOC113544865
TU311015 other downstream 185399 2739156 ~ 2760185 (-) False si:ch73-1a9.3
TU311022 other downstream 185399 2756533 ~ 2760185 (-) False si:ch73-1a9.3
TU311013 other downstream 185399 2757032 ~ 2760185 (-) True si:ch73-1a9.3
TU311014 other downstream 185399 2757032 ~ 2760185 (-) False si:ch73-1a9.3
XR_004579822.1 other downstream 225021 2712442 ~ 2720563 (-) True LOC113544801
TU311217 other upstream 16131 2966348 ~ 2967161 (-) False LOC113544717
XR_004579813.1 other upstream 617322 3567539 ~ 3627293 (-) False akap1a
XR_004579815.1 other upstream 619911 3570128 ~ 3627293 (-) False akap1a
XR_003404550.2 other upstream 619911 3570128 ~ 3627293 (-) False akap1a
XR_004579814.1 other upstream 621877 3572094 ~ 3627293 (-) False akap1a

Expression Profile