bhlha9 (bhlha9)


Basic Information

Item Value
gene id bhlha9
gene name bhlha9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3309739 ~ 3311030 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943797.2
TCAGGAGGAAGCAAAGGTAATCATATGGTGTCTGGTGGCGCCAGCCAAGAGGCTCTGCACTGCACAGCAAACCGAAACTTTGGTACAAAACTCCACGGTGAACTGGAGAACCAAGACACATCTAGCAGTTCCAGATTTTGGCAATGAAAAGTCGCAGCAGCTTCACTGGCTCCGATTTCTCAGAGGAGGAGTTGGAGCTCAGTCTGGAGGCTCAGGTAGATGATGACGCCGTTGACAGTGGCCGGAAACATTCCTACACTGATAGCGCAAGTCCCAGCAGCACCCTCAGTGAGGCAGAGGAGAGTCGACCGAAGAAACGCAGCAGGCCAGTGCGCTCCAAGGCCCGTAGGATGGCGGCCAATGTGAGGGAGAGGAAGCGAATTCTGGATTACAACCAGGCCTTCAATGCACTGCGTGTGGCACTCCATCATGACCTGAGTGGCAAACGCCTTTCCAAGATAGCCACGTTGCAGCGTGCCATCAACCGCATCTCAGCGTTATCCGTGTTTCTTAGCAATAACCCACCCAACGGAGCCAGCAAAGCCTGCAACCACCGGGAATGCCATGGACAACCAGGACAAGTGTCCCCGACCCATCTAGAGCCCCAGGGGTACATGTCCTGGGAACAACCACTGGCGCACCAGATGCAGATGCACAGACTGCCTTCAGAGCAGCAAGTTTACATGGACCATTTGAGACACGTGGGTTCTACCTGTCCGCTATCACCACACTATTCTTGCTACTCTCCCGATGTCCAGCTTTATGCGACAGGTGGATCCTGTGGCAGTCCTGCCAGTGACAACACCAGTCCCCCTCGGTATGGGCGAATGGGTGACGGGTTGGGCTTCCAGGCTGGGGTTTGGGGATCCTGTTCTCAGAGCTATGTGGACGGGCATAGTGAGGCAACTCAGACTCTACCTTTCTCTTGGCACATGGGCTATCTCCAGGAGACAGGTCCTCAACACTGCTATCCAATGTTATGACACATTTTCTGAGGGAACTGTGATAAAATGAGATGAGGACACTGTGTAGGTGAAATCTCTAAGTCATAACCTGATCTGAAGCTACGACACCGGACAATCACTTGTACAATGAataaatttttcaaatgttattAGAATTGAGTTTAAAGCTAGTGCTTTATGAATGAATAGGTGAATTATGACCCAGTATGTCACATTGCTGGCCTTACAATCTAAAacctcaaaaacacacatggatgTAGAGGTAAATAAAAGTGTTATGAAATGTACCCATGCTGGAAAGGCTCAGGAATCACTGATTGTATGAAA

Function

symbol description
bhlha9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within pectoral fin development. Predicted to be located in nucleus. Is expressed in pectoral fin. Orthologous to human BHLHA9 (basic helix-loop-helix family member a9).

NR:

description
PREDICTED: class A basic helix-loop-helix protein 9

GO:

id name namespace
GO:0033339 pectoral fin development biological_process

KEGG:

id description
K24145 BHLHA9; class A basic helix-loop-helix protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943797.2 True 1292 mRNA 0.50 1 3309739 3311030

Neighbor

gene id symbol gene type direction distance location
wscd1b LOC108276571 coding downstream 33008 3263413 ~ 3276731 (-)
LOC117599375 LOC108277124 coding downstream 226698 3074500 ~ 3083041 (-)
LOC113544941 samsn1 coding downstream 235286 3064189 ~ 3074453 (-)
serpinh1a serpinh1a,LOC108277285,LOC108435823,LOC107743426,LOC107680328,LOC107570353,LOC107583375,LOC107653702 coding downstream 285294 3018796 ~ 3024445 (-)
LOC113544923 tsku coding downstream 293566 3013907 ~ 3016173 (-)
nf1b LOC108276969,LOC108435812,LOC106567758 coding upstream 321128 3632158 ~ 3699612 (-)
LOC113544747 LOC108276974 coding upstream 389440 3700470 ~ 3710581 (-)
LOC113544774 LOC108276973 coding upstream 399993 3711023 ~ 3715177 (-)
ksr1a ksr1,ksr1a,LOC107741140,LOC107653729 coding upstream 404809 3715839 ~ 3750194 (-)
cuedc1a LOC108277236,LOC108435809 coding upstream 445552 3756582 ~ 3781707 (-)
G262728 NA non-coding downstream 168071 3141027 ~ 3141668 (-)
G262681 NA non-coding downstream 284527 3024861 ~ 3025212 (-)
G262646 NA non-coding downstream 323064 2986455 ~ 2986675 (-)
G262598 NA non-coding downstream 395868 2913664 ~ 2913871 (-)
G262572 NA non-coding downstream 454072 2855054 ~ 2855667 (-)
G263077 NA non-coding upstream 7047 3318077 ~ 3325821 (-)
G263117 NA non-coding upstream 51340 3362370 ~ 3414133 (-)
LOC113544916 NA non-coding upstream 561115 3872145 ~ 4007136 (-)
G263272 NA non-coding upstream 586817 3897847 ~ 3898067 (-)
G263397 NA non-coding upstream 800839 4111869 ~ 4112084 (-)
LOC113544717 LOC108276916,LOC108276915 other downstream 341557 2965655 ~ 2968182 (-)
si:ch73-1a9.3 NA other downstream 549554 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 585266 2712442 ~ 2724473 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 1529332 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1898800 1265452 ~ 1410939 (-)
akap1a NA other upstream 256389 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 741959 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 1605460 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 1722838 5033868 ~ 5157309 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 1935904 5246934 ~ 5251500 (-)

Expression


Co-expression Network