atp6ap1la (atp6ap1l,LOC108254970,LOC107680564)


Basic Information

Item Value
gene id atp6ap1la
gene name atp6ap1l,LOC108254970,LOC107680564
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 16882002 ~ 16891308 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932444.2
TCGGGGCAGATTATGAAGCAGCAGTATTCGTTTGAGGAGAAAGGCTCTGGACcttttacatatatacatggcAGCACCGATGTCTTTGgctttattttctgttattttcctGCAGATATCTTCGTCTTACGAACAAGTGCCTGCTTTTGTCGAGGGGAGTTCAGATGAAGCAGTGTCACAAGACAGCCAAATCAGAGAAAATGGTGTCGGTGGTGAGAGTCAGAGCGTCTGGTACGATCACGGCTCGTTGTTCACAGCGGAGGAGATGAGACCGCCTCTGCAGCTACGTGACTGGAGGCCGCCGTCTCCTCGGcctagcaggagaaagttgctgcAGTATGGAGGAATCATGCCCTACTCTCCTCTGAATGTTGTTTACAATGGTAAAACATGCATCTTGTTTAGAGCCAGGAAGCTGGCCATCAGGTACAGAAATCACACACTAGTGGACCTCACACAGAGAGTGTTTGGCCCTGATGCAATAGTGGACACCAGAGGCTCATTCTGCAGCAAGGACAAGGCCACACTCAACATACGATTTGGAGATGTGGAGGAGCTCAGAGGACTTGCCATCAGACTGCAGATGTCCAACACATTCTATGAATCAGCAGGACAGAACTGGTTCACTCTGGATAGCGTCCACATCCACTACAACTGGACACACGAGGCCACGTTCAACGCCACGGACGTGTACGCTCCCTCCACCAACTCGTACCACTGCCAACACGTCAGCAGCCTGCAGAAATACGACACGCTGCTGGTGCCCAGCTCCAACACGGACAACGCGGCAAACTGGCACATCACCTTCACAGACTTCCAGattcaagcattcaacgTCAACTCGAACAAGTTCTCCTCAGCCAGCGACTGCGCCACGTTCTTCACCCCGGCCATCCTCATGGGTCTCATCACGTCGCTGATCCTGCTGCTCGTCCTCGCCTACGCCCTGCACATGGTGGTCCACCTCAAGCACATCGACCGCTACGAAGAGCACAAGACCACCGTCTACTTCCCCCGAAGCACAGAAGCTGAAAGTGCTGAGAAGAACAGCCTGTAGACCAGTAGGATCCCCCCGCCGACCTCCAAGCACAGAGACGGACAGTTCGGCAACTCTGAGCTCTCAAGCCCGTACGAGTGAAAGTGCAGGAGCAGGCTGGAGGCGTCGCGTTAAGAGCGTTTTCGCTTCTGTCTGTGCTACTACACTCGCAGGATTGTGGTAGGACAGAAAGAGCAGATTCCTGCAGGGTTTTAAAAATTGGAGATACCCCGATTTGTATCTACCACTagatctctttttctttttttgcgaGATGAATCGCAAGTGATCGGGATCTGAAAGAGAACCTCAGATTCCTGAATTAATTCAAATTAGCACAGTGTACTTCGAATTTATATCGTCTGTCTCATATAAGCATATAACCTCCTGGTGAGAATCAGGTTAAATAATATATGGACGCTTTATTACACTTCACTTACAAACTGTGTATAAACCATTATGATTTATAAGTGTATTAGACATTAAAAATATGGAAGTACTATACTCAAAACTTTGATCTTCTCAGTAACTGaacatttttatccactttacacaaaagttaaaatgaataaaatatgaaaataattgtCTGTACTGGACCAGTCAGAAGTTGGGACACAACTGATTGAATGTATGTTATTCATCAGATTAAAGATTCGCTTTCTAAAGGCTTAAGCTTGGATTTTGATGCTCATTTAAATTTACTTCCAAAgcataaaattttcattttgggAAAAGCAGCCATCAGATGGTTTCTTATGAAGCTATGAGTATGAAAATATTATCAGGGCTACAttgaaatatctgaaatataaaAGATCTAAAATGtagttgttgctttttttaaacacatttttgtttttcgcctaattttgttattttataggCTTGATGAATTGACTGTTATtctaaaatgtgaaagaaattaaaaaattgaaaaataccTTCTATGAGTAGGCGTGTCCAAACTTTTTCACTGGTACTGTATATGACTGACGTACATAAAGTAATGGTTTCTATGCAGTATGTAACGACCCGAGTGTCATGAAATCCCTCAAAGATTTAGAGGATGACGTAAGATATTTGATTGTTTACTGGCACTCTTTCTGGACGATGTGTTTTGAAATAGTTGTGTTCTTGCTTTTTTGTGCAACTTGTATGTTTAATCCGGTtttgtaatttcttattttttaaaattctttttaagTGAATGCATTCAAGCTGAGCCTTTGACAATAACATGGATCTCTTATAAGCTACTTGGATTTTATCTACAACCATTGAAGCACAATGGAAGCAACGTGAAGTTGTAACATACAGCATGTGGCTAGAAACATTTCAGTACCACAATCATATAAATGTATACAATACTGATGATAGTCATTATATACTAAATGAGGGAATAGCCTGTCCTTTTTCCATTTACGCATATATGAAATGGGCTATTGTGTATTGATGTGGAATAATTATTGTCCCCACTATTTCTGTTGAGTTCAATAAAACCAGCAGCTCATTCA

Function

symbol description
atp6ap1l Predicted to be involved in regulation of cellular pH. Predicted to be integral component of membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex.

NR:

description
PREDICTED: V-type proton ATPase subunit S1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932444.2 True 2553 mRNA 0.42 7 16882002 16891308

Neighbor

gene id symbol gene type direction distance location
ccdc66 NA coding upstream 194459 16672820 ~ 16687543 (+)
nicn1 nicn1 coding upstream 1004736 15863456 ~ 15877266 (+)
rbm15b rbm15b coding upstream 1492874 15385294 ~ 15389128 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding upstream 1499054 15375847 ~ 15382948 (+)
dock3 dock3 coding upstream 1513872 15138351 ~ 15368130 (+)
pde12 pde12 coding downstream 1923 16893231 ~ 16897114 (+)
LOC113537970 arf4,LOC108254967 coding downstream 19097 16910405 ~ 16912976 (+)
slmapa slmap coding downstream 53156 16944464 ~ 16998819 (+)
LOC113537897 flnb,LOC107657976,LOC107712990 coding downstream 115299 17006607 ~ 17075644 (+)
LOC113537900 LOC108254753 coding downstream 185238 17076546 ~ 17078049 (+)
G309170 NA non-coding upstream 17357 16862146 ~ 16864645 (+)
G309056 NA non-coding upstream 286652 16595137 ~ 16595350 (+)
G308915 NA non-coding upstream 575999 16305796 ~ 16306003 (+)
G308827 NA non-coding upstream 761713 16119831 ~ 16120289 (+)
G308822 NA non-coding upstream 768995 16112799 ~ 16113007 (+)
G309184 NA non-coding downstream 11873 16903181 ~ 17000024 (+)
G309187 NA non-coding downstream 12549 16903857 ~ 16904257 (+)
G309194 NA non-coding downstream 26691 16917999 ~ 16919155 (+)
G309201 NA non-coding downstream 77088 16968396 ~ 16969437 (+)
G309208 NA non-coding downstream 124328 17015636 ~ 17016244 (+)
amigo3 amigo3 other upstream 380318 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1082112 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2357026 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2405185 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3189090 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 369671 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1796089 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 2195717 19087025 ~ 19087806 (+)
svbp NA other downstream 2603450 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2616881 19508189 ~ 19517178 (+)

Expression


Co-expression Network