nicn1 (nicn1)


Basic Information

Item Value
gene id nicn1
gene name nicn1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 15863456 ~ 15877266 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932784.2
GCACAGACCGGAAGTAGCGCGGACCTGTATCCCGGAAAGATGCTCAGACAAAACATGCTAGCTATTCGTTTAGCAAAcgcattttgtaaataaaagtgCAGTTGTACTGAGTTTTATGTCTGCTTTAAAAGTAAGTTTGCTATAAAGGTTGACAGCTGCGgctttttaaatgttaagtAGCTACCTTTAACGCAAGAGAGTCCACCATCGGTCCAGCACCATGCGCGGTGATCCAGTGGACTGCATAGTGAAATCCCCAGTGGCTCTGCAGCTCGGCGATGTGGTGACCGATTCAGTCCGTCCCGGTGTTTATATCACAGACGTCGTACTTGCAACGCCGGTCAATATTCAGGAAATCTCCTTCAAGAACTACTACACAGCCTATTTGACGGTGCGAGTGTTGAAGAATGAGGAAGGGAGTGACGAGAGATCCGCTAAGTGGTTCACCTGTGTGAGAAACTATGGCCTGATGTCCAGTCCACACACTGAAGGAGGATCACAGGACTACTTTTCTATCTACAGACAACAGATGCTGACGGATCCAGATAACGTTATTACCGTGCGGCTCATACTGAGACAGCCTTCTTCAGTCTGGCTGAATTTCAACATAGAGGACATCAAAATATACTCATTGGCAGACGAAgAATCAGAGAGAGACGTTCCTTCCTGGTTATCTACCATCACACCTGCTGAAGAGCCTTTTGATTTGAATGGGCTTCCCGATCCAGACACAGTGTCATCTACTATTCAGCACATGTGGGCTCTCACTGAGATCATGCAGTCAAACCAGACCTCCGCCTCCATCGGCCGCTTTGACatgcttttatctgaAGTGAGGCCAAACACAGGCCAAGCATCAGGCTGTTCAAAGACTTGATAGAAGTGCTGCAGAACTAAGCGTTCACCACCAGACCACCAAGCAAGTGCAAGACAGTTTTAGGAAGAACCAAAGGAA

Function

symbol description
nicn1 Predicted to be active in nucleoplasm. Orthologous to human NICN1 (nicolin 1).

NR:

description
nicolin-1

GO: NA

KEGG:

id description
K16607 NICN1; nicolin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932784.2 True 955 mRNA 0.47 7 15863456 15877266

Neighbor

gene id symbol gene type direction distance location
rbm15b rbm15b coding upstream 474328 15385294 ~ 15389128 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding upstream 480508 15375847 ~ 15382948 (+)
dock3 dock3 coding upstream 495326 15138351 ~ 15368130 (+)
si:dkey-49n23.1 si:dkey-49n23.1,LOC108255172,LOC108436691,LOC107719940,LOC107571036 coding upstream 737058 15064877 ~ 15126398 (+)
ssuh2.1 LOC108255262,LOC108436692 coding upstream 801456 15045544 ~ 15062000 (+)
ccdc66 NA coding downstream 795554 16672820 ~ 16687543 (+)
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding downstream 1004736 16882002 ~ 16891308 (+)
pde12 pde12 coding downstream 1015965 16893231 ~ 16897114 (+)
LOC113537970 arf4,LOC108254967 coding downstream 1033139 16910405 ~ 16912976 (+)
slmapa slmap coding downstream 1067198 16944464 ~ 16998819 (+)
G308404 NA non-coding upstream 449634 15412099 ~ 15413822 (+)
LOC113537967 NA non-coding upstream 455815 15393609 ~ 15407641 (+)
G308018 NA non-coding upstream 1063314 14798973 ~ 14800142 (+)
G307997 NA non-coding upstream 1082698 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding upstream 1100282 14760831 ~ 14763174 (+)
G308737 LOC105913228,LOC107592839,LOC107701594,LOC108431596,LOC107691887,LOC100331190 non-coding downstream 116129 15993395 ~ 15994043 (+)
G308758 LOC108280992,LOC108431596,LOC107756932,LOC107592839 non-coding downstream 143950 16021216 ~ 16022142 (+)
G308760 NA non-coding downstream 150623 16027889 ~ 16028286 (+)
G308764 NA non-coding downstream 160150 16037416 ~ 16037632 (+)
G308765 NA non-coding downstream 160391 16037657 ~ 16037976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 63566 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 1338480 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 1386639 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 2170544 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 3400920 12457601 ~ 12462536 (+)
amigo3 amigo3 other downstream 612095 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 1383713 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 2810131 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 3209759 19087025 ~ 19087806 (+)
svbp NA other downstream 3617492 19494758 ~ 19498671 (+)

Expression


Co-expression Network