LOC113537908


Basic Information

Item Value
gene id LOC113537908
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14760831 ~ 14763174 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403804.2
gtaagtttttttctttcttttttcccctaaaacgtttctaattgtttttcacttttttttctgtatcacATTAAGGGTGGAAACcaatctgacatgatttatctcgatttcattttttacaacacaaaatcctgcaattttaacagggggtGTAGACATTTATACCCACTGTATATATCAAACTTATATTCTAACTGCCTTAAGTTCTAAAAAAAACTCAGattacatgtaaatgtagctagctTGTTGGCTTGGTGATTAGGTTAGATGTCTAGCTAGTCCATAGTGTAATCAAATTCCATGACTTGCTGTGCAAAAACTGCTAGCTAAGTGAATTAATTgaaccaaacaaacacaaacagtattCTATTGCAATATTTAATTGTATTCTGTGGTATCCTAATTCATAGGTCCCACTTGTTTTGCGTAACGCTAGCTTGTGCATGAAGAGccaaaatataaactatttaGCTGATCTCTCCGCTAATGCAGGTCAAGTCACTGATCATTCATATTCCTCTGTCTTATTGAGATGCACTGATAAGAGAAGATACATAGAAAAGGGAAGCTGGCATTATTTTCAAGGGTATTATAGCAGTTGATATTTGCGGATATTTTCAtagctgtttgttttatatactaattcattaaaatagtttgtaattaaattgtgtgtgagagatagaaAATACACAGTCAGCAACTAGAAATATGCACATATATAATGTTTTGATTGAACAAAACACTTTTGATTGACCAGCCCAAAATCACAAACTAGAAAGGGACTGAGTATGTGTGACGCGAGGTCTAATTGCAGGTTTGACTGAGTCCCACCACACTGCAAATTCCACTTTAACCCCAGATTAGTACTAATATGCAGAATTATACAAAATTCTGCAGACCAATGGCTATAGCACTCAGGTCATATCCCAGCTCACCCTTTCAAGCAGTGACTAGGGCTTTATTTGAGAAAGGACAGAAATTGAGAGTTCTAAAAAAATCTTTGCTTGAAATTCTTGGTGACTTCGTGATAGCCCGAGTCCAGTTCTGTAGTGATATGGCTTTAGAGTAGTGGTAGAAAGATATGAAAACAGATGGCCAGCAGgattgtggagtgtgtgagcaaAGATAAGAAAAAGGATGATAagtttgtgtatttctgtttacattttggcAAAGAAGGAGGAGTTTCAACATTCGTCTTTCTCTTAGCATTagctgtattaaaaaaagaagaaaagcaacATTAAACAGACTTGGTCTGTTTCAACACAGCTGACTATACTTGACTAAGgtattaatgtaaaatgtcGTCTTATGACATCCAGTAAAAGGAACTGTTTCTCAGAGTCATCGGCTTCATCATGTGTTTTTGTCTCAAGACTCGATtttgaaaaacactttttgaAATAGTTATTTATAAATTCTATTGGCTTTGCTTACATGGTCTGATACACTAGATATGTGCAGAAGTTGCCAAATCCAATTGTATAGCAAActggacatttttatttaatatttaatattttatattgcgTTTGAGTACTAGATGATCAGTATACAGTGTTAGCTGCAATTTGCATGAAGCAATAGCACATTCTGCAAGTATACAAGAAACTGTATGTTCCCAATGGTACAAAATTTGCAAATGCACTCTTCAAGATACGACGGCAGTCCTTTCAGGTCTAATGACGCACCTTAGTTGAGTTTTAACTGTCTACAACATTTATGTTAACTTTCCCAGATGAAATTCTGAATGTACCAAAGACAGGCCTTGGATAAAGCGccacatttacaaacatttgtaaGGATCTTGTAAGGCAACACCAGTAGAATGCTTTTTGTTGTGAAAGTgcagtacctttttttttttttttgaaaaagagGAAGCCAAACATTGCAGTTCACTTAAACCTAACATAACACATTCAGTAATTATATCAGCTATTATGATTTTTTCAGCTGTCCTACTCTATGAATGTCTATGTACATGTTTATCATTGAAACATAAtgttccatttttctttctaactTGACGTCATGATTGCAAATTTGTAAAGATTTGCATGAGCCAAAGCATATGAAAACCTACAAATGGCAAGGTTATGGCGAAAGTTTATGTTTATAGCTTTTCTTGTCTGAAATCCACAGTTTAAAGATAGAATTCTTGCAATAAATTTTGTGATGTGAGCTTGCTAATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403804.2 True 2202 lncRNA 0.34 2 14760831 14763174

Neighbor

gene id symbol gene type direction distance location
LOC113537808 lsm3,LOC107676354,LOC107562728,LOC100705055 coding upstream 79970 14674490 ~ 14680861 (+)
podxl2 podxl2 coding upstream 99090 14630530 ~ 14661741 (+)
mcm2 mcm2,LOC107718478 coding upstream 132224 14616988 ~ 14628607 (+)
ccdc51 ccdc51 coding upstream 144937 14613763 ~ 14615894 (+)
LOC113538112 LOC108255148 coding upstream 150667 14599257 ~ 14610164 (+)
slc6a6b slc6a6,slc6a6b,LOC107719944,LOC107562730,LOC107676359 coding downstream 2012 14765186 ~ 14789849 (+)
cand2 cand2,LOC107557972,LOC107691187,LOC107719941,LOC107720354,LOC107657311 coding downstream 249691 15012865 ~ 15023674 (+)
LOC113538136 LOC108255245 coding downstream 265960 15029134 ~ 15040134 (+)
ssuh2.1 LOC108255262,LOC108436692 coding downstream 282370 15045544 ~ 15062000 (+)
si:dkey-49n23.1 si:dkey-49n23.1,LOC108255172,LOC108436691,LOC107719940,LOC107571036 coding downstream 301703 15064877 ~ 15126398 (+)
G307976 NA non-coding upstream 162219 14598393 ~ 14598612 (+)
LOC117599878 NA non-coding upstream 170010 14583567 ~ 14590821 (+)
G307971 NA non-coding upstream 171599 14589025 ~ 14589232 (+)
G307588 NA non-coding upstream 612386 14148141 ~ 14148445 (+)
G307281 NA non-coding upstream 664045 14096270 ~ 14096786 (+)
G308018 NA non-coding downstream 35799 14798973 ~ 14800142 (+)
LOC113537967 NA non-coding downstream 630435 15393609 ~ 15407641 (+)
G308404 NA non-coding downstream 648925 15412099 ~ 15413822 (+)
G308707 NA non-coding downstream 1110831 15874005 ~ 15875206 (+)
G308737 LOC105913228,LOC107592839,LOC107701594,LOC108431596,LOC107691887,LOC100331190 non-coding downstream 1230221 15993395 ~ 15994043 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 235855 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 284014 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 1067919 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 2298295 12457601 ~ 12462536 (+)
G306103 NA other upstream 3245018 11515059 ~ 11515813 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 993716 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 1726187 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 2497805 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 3924223 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 4323851 19087025 ~ 19087806 (+)

Expression


Co-expression Network