G307971


Basic Information

Item Value
gene id G307971
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14589025 ~ 14589232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU364901
tcctgcctcatgcccagtgttcccaggctTGGCTCCGTATTCACCATGAgcaggatgaatgaatgaatgaatccagGTCATGTAGGTTTAAGCCTGTAAACACACCTATATACCagatgacatttttccaatcttcaactgtccagtatcggtgagcctgtgcccactgtagcctcattcctgttcttggctgatgtTATTGGAAcct

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU364901 True 208 lncRNA 0.47 1 14589025 14589232

Neighbor

gene id symbol gene type direction distance location
LOC113537860 bcdin3d coding upstream 9677 14576334 ~ 14579348 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 coding upstream 15598 14532710 ~ 14573427 (+)
smarcd1 smarcd1,LOC107694342 coding upstream 75290 14495263 ~ 14513735 (+)
gls2b gls2b,LOC108255189,LOC108431573 coding upstream 457018 14114476 ~ 14132007 (+)
rdh5 rdh5,LOC107573570,LOC107586996,LOC107653177,LOC107745400 coding upstream 476515 14102055 ~ 14112510 (+)
LOC113538112 LOC108255148 coding downstream 10025 14599257 ~ 14610164 (+)
ccdc51 ccdc51 coding downstream 24531 14613763 ~ 14615894 (+)
mcm2 mcm2,LOC107718478 coding downstream 27756 14616988 ~ 14628607 (+)
podxl2 podxl2 coding downstream 41298 14630530 ~ 14661741 (+)
LOC113537808 lsm3,LOC107676354,LOC107562728,LOC100705055 coding downstream 85258 14674490 ~ 14680861 (+)
G307588 NA non-coding upstream 440580 14148141 ~ 14148445 (+)
G307281 NA non-coding upstream 492239 14096270 ~ 14096786 (+)
G307293 rpp14,LOC103374991 non-coding upstream 530823 14051835 ~ 14058202 (+)
G307262 pdhb,LOC107721006 non-coding upstream 572631 14015162 ~ 14016394 (+)
G307272 NA non-coding upstream 585194 14003608 ~ 14003831 (+)
G307976 NA non-coding downstream 9161 14598393 ~ 14598612 (+)
G307997 NA non-coding downstream 110765 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding downstream 171599 14760831 ~ 14763174 (+)
G308018 NA non-coding downstream 209741 14798973 ~ 14800142 (+)
LOC113537967 NA non-coding downstream 804377 15393609 ~ 15407641 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 64049 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 112208 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 896113 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 2126489 12457601 ~ 12462536 (+)
G306103 NA other upstream 3073212 11515059 ~ 11515813 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 1167658 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 1900129 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 2671747 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 4098165 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 4497793 19087025 ~ 19087806 (+)

Expression


Co-expression Network