LOC113537860 (bcdin3d)


Basic Information

Item Value
gene id LOC113537860
gene name bcdin3d
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14576334 ~ 14579348 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932527.2
aaataacagtaaaaaagaaaaaaaagaaagaaagaaaaagacatgtATAAATGAACCTGtctcatgtttcatgttctttccgAAAGCAAGTGAATACGACATAGCCGTAATTCCCGCTTCAGAAGAGGGAAATAGGACAATTCCGGtagcacgtgaaggcagcattaaGCAACACCGACGGAATTATTTTGAAGACGGACCAAAATGGAGGCGTCCAGCGATAAACACACGTGTTCAGAAATAGCTGAGGAGAAAGAGGATCCTGGTGCAGCTCCATATggaaattttataaattattacacatttaatcCGCCAGAGAATCGTCTCAGTTTGATCCCGAGCACACTGCTGGAGGATGTGGGCTGTCAGCCGGCCAGTGACGCAGAGGCGGTGCTGATGCTGGATGTGGGCTGCAACTCTGGGGACTTATCTATTGCACTGTATAAGCATCTTCTTCAAGATCAGCCACCCGGAAGTgattcttccaaaagattttaCCTACTTGGATTTGACCTGGACCAGGACTTAATCCTACGAGCTCAGAACTCTAACCCATTCCCCCAAAATGTTCAGTTCATTCCCCTTGATATTACCAGGGAGGAGAGCCACACTGAACTTACCTCCTATCTGGAGAAGTTTGGACGCAGTCACTTTCACCTGTGTTCCTGTTTTGCTGTGACGATGTGGGTTCACCTGAACCACGGAGATGCTGCCTTATTAGCTTTCCTCTCACGGCTCGCCTCTGTCTGCGAGTGCCTGTTACTGGAGGCACAGCCGTGGAAATGTTACCGCTCGGCTGCTCGGCGGTTACGAAAACTCGGACGCAGAGACTTCGACCACTTTAAGACTCTGGAGATCCGTGGGGATATGGCAGCTCACGCTAAAGAGCATTTAGAAAAGAAGTGTGGAATGGAGCTGGTTCAGAGTTTCGGTAGTACATCGTGGGACCGGAGCCTTTTGTTGTTCAAGAGGCGATAATTAGTGACCAGAAGAGAAAGCAGTAAGCCTTAATTTTCAATTAGCAGAAATGATGTCATTCATTCTGGTGCATAACCAATTAAATCCTATCATAAACTACTATTGTGTCAAGACACAAGACTTTTCAAAGAGTCATTGTAGActcctttttaaatgaaaagttaCAAAATAAAGGAATTGCACTCACTCTGTTGGGGATGGTCTCACATGAACACTTcccaaaacattttacattttacaacatTTATACCCAAGACTCCTTGCTACCTTGATACTATAGACTTGTACCTCCTGTAATCATATACACTGTGCAGttctcatcccaggactcttattcacaatctgttcatactgaacatccatAAAATACACTTACTGTAAATACACaatactgtttgactttatagtatacagtggTAGAAGTGTAAGAATTtttaatcccactatctggtgtcaccgaGAAGAGGTTgcgttcccttttgagtctgattcctctcaaggtttcttcctcatgacttctcagggagtttttccttgcctctgTAACCTCTGGCTAGCTCACGAGGGATCCAAATCTACAccaggatttctgtaaagctgctgtgaTCATGTCTATGGTTAaaggtgctatacaaataaaattgaattgaattatctCTTGACACATTGAACTTTAGTGAAGTCTTGTAACTCAGTGGTTCTCATAGTGGGACTATGAGATAACTCTGgggttataaataaatatatacaggcTGCTGTCAGTAATGGCTATAAACAATGTCATGTTGGACgtaatgataattataataaaatgtgttcagtgAGTGGGGAAAAACTGCTGTAtgc

Function

symbol description
bcdin3d Predicted to enable O-methyltransferase activity and RNA methyltransferase activity. Predicted to be involved in RNA methylation; miRNA metabolic process; and negative regulation of pre-miRNA processing. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm. Orthologous to human BCDIN3D (BCDIN3 domain containing RNA methyltransferase).

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K25191 BCDIN3D; RNA 5'-monophosphate methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932527.2 True 1824 mRNA 0.42 2 14576334 14579348

Neighbor

gene id symbol gene type direction distance location
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 coding upstream 2907 14532710 ~ 14573427 (+)
smarcd1 smarcd1,LOC107694342 coding upstream 62599 14495263 ~ 14513735 (+)
gls2b gls2b,LOC108255189,LOC108431573 coding upstream 444327 14114476 ~ 14132007 (+)
rdh5 rdh5,LOC107573570,LOC107586996,LOC107653177,LOC107745400 coding upstream 463824 14102055 ~ 14112510 (+)
bloc1s1 bloc1s1 coding upstream 480315 14091935 ~ 14096019 (+)
LOC113538112 LOC108255148 coding downstream 19909 14599257 ~ 14610164 (+)
ccdc51 ccdc51 coding downstream 34415 14613763 ~ 14615894 (+)
mcm2 mcm2,LOC107718478 coding downstream 37640 14616988 ~ 14628607 (+)
podxl2 podxl2 coding downstream 51182 14630530 ~ 14661741 (+)
LOC113537808 lsm3,LOC107676354,LOC107562728,LOC100705055 coding downstream 95142 14674490 ~ 14680861 (+)
G307588 NA non-coding upstream 427889 14148141 ~ 14148445 (+)
G307281 NA non-coding upstream 479548 14096270 ~ 14096786 (+)
G307293 rpp14,LOC103374991 non-coding upstream 518132 14051835 ~ 14058202 (+)
G307262 pdhb,LOC107721006 non-coding upstream 559940 14015162 ~ 14016394 (+)
G307272 NA non-coding upstream 572503 14003608 ~ 14003831 (+)
LOC117599878 NA non-coding downstream 4219 14583567 ~ 14590821 (+)
G307971 NA non-coding downstream 9677 14589025 ~ 14589232 (+)
G307976 NA non-coding downstream 19045 14598393 ~ 14598612 (+)
G307997 NA non-coding downstream 120649 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding downstream 181483 14760831 ~ 14763174 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 51358 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 99517 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 883422 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 2113798 12457601 ~ 12462536 (+)
G306103 NA other upstream 3060521 11515059 ~ 11515813 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 1177542 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 1910013 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 2681631 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 4108049 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 4507677 19087025 ~ 19087806 (+)

Expression


Co-expression Network