gls2b (gls2b,LOC108255189,LOC108431573)


Basic Information

Item Value
gene id gls2b
gene name gls2b,LOC108255189,LOC108431573
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14114476 ~ 14132007 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932802.2
GACAGCTGCTGTTCAGTGCCGCACGTGCGCACTAGTCTTCCGCACGAGCCCCTTCTGCAAAGTCCAGAGACTGTCGAAAAACTGTGTGTTTAATCTTCGTCTGTGTGCAAGTGGAAGATGATGTCCTGTTTGAGAACTTTTGGGCGGATTAATGTCGGAATGATGGAGTTTCTTGTGGAAAATGTCGCTAAAAGCAGCGCACTGGGCTTGTACTGCGGCAGCGCGCGCCGAGTCTCGCGACAGAGGCGGTGTTTCAGTAACGGTTcttcacagctttacctcagcaGAACAACTACTGAACATACTGAACACCCAATACCAGAGGGAGGTAGGGCAGGTGAAGGTCTCTTCTCAGGATTGGAGGATTTGCTGTTCCACACCATAACTGATGGGCAGGACAGGATCCCCATCTCTCATTTCATCAGTGCTATTAAAAGCACAGGTCTGCTGTCCTCTGACCCCCGTCTGCGGGACTGTATGGACAAACTGCGGCAAGCTGTCCGAGAATCCAATGGTGATGTCATGATGGACCACAAACTATTtcgcagATGTGTAGGCAGAAACATCGTCCTGCTCTCCCAAGCTTTCAGAAAGAAATTTATCATTCCAGAGTTTGATACATTTGTTGGTGTCATAAATCAGATCTATAACAGAGCTAAACAGCAGCACGAAGGTCAAGTAGCAGACTACATTCCACACCTTGCCAAGTTCAGTCCCAGTCTTTGGGGGATTTCACTGTGCACAGTGGATGGTCAGAGGCACTCAGTAGGTGACACCAAGGTGCCATTTTGCCTGCAGTCATGTGTGAAGCCACTGGAATATGCCATTGCTGTACATGAGCACGGAACTGAACATGTGCACCATTTTGTAGGGAAGGAGCCCAGTGGGCTAAAGTTCAACATGCTCTcccttgatgatgatgaTAAACCTCACAATCCGATGGTGAATGCAGGAGCAATTGTCATCAGCTCTCTTATCAAGcCTGGGGCCAACAAAGCAGAGAAATTTGACTATgtGATGGACTTTGTGCAGAAAATGGCAGGCAAGGAATATGTAGGCTTCAGTAATGCCACGTTTCAGTCAGAAAAGGAGACGGGAGATAGAAACTTTGCAATAGGCTACtacctgaaagagaaaaagTGTTTTCCTCATGGGGCAGATATGATTGATGCTCTAGACTTCTACTTCCAGCTGTGCTCTATTGAGGTGACATGTGAGTCAGGCAGTGTGATGGCGGCCACGCTGGCCAACGGAGGAATCTGTCCCATCACTGGCGAGCGAGTACTGAGCTCTGAGGCTGTGAGGAACACACTCAGCCTCATGCACTCATGCGGCATGTATGACTACTCTGGCCACTTTGCCTTTCATGTGGGATTGCCTGCTAAGTCGGGGGTGTCAGGAGCCGTGTTGTTAGTGGTGCCCAATGTGATGGGGGTCATGTGCTGGTCACCACCGTTGGACAGGCTGGGGAACAGTGTAAGAGGCATCCGCTTCTGTCAGGAACTGGTGTCCCACTTCAACTTCCATAATTATGACAATCTGAGACACTTTGTTAAGAAACAGGATCCACGTCGACAATCCGGTGATGAAAGGAACAAGTCTGTGGTGAACCTGATGTTTGCAGCTCATAGTGGAGATGTTTCAGCCCTCAGGAGGTTTGCACTGTCTTCTATGGATTTGGACCAGAAGGACTATGACTGTCGTACAGCACTTCATGTTGCTGCTGCAGAAGGTCACGTGGAGGTTGTGCGGTTTTTGACACGTACATGCAAAGTGAACCCGTTTGTGAAGGACAGGTGGGGAAACATTCCTCTGGATGATGCGCTGCAGTTCGGTCATGACAGCATCGTGAAGATTCTGCAGGAGTATCAGCGGGCCTTTGAGGTTTTCACAGAAGACACTCAAAAACTTGGCTCTGCTGCATGGCAGTGAATGAATGCTTTGGATTCTGGTgttaaaaactattattatactttatacGTAAGACATTTAACTTTACGTTAAAATGTAGAGACACTCATCTCACATAACAGATCAGAAAAGGTAACAGGTCTCTAACCTGCTCTTTCATTTTATTGACACCATTGTACTGAagtcacagagtgtgtgtttaatcttgCTGCTGCTTTGATCTACAGTAATAGATTGTGTGTGGAACTCTGATTAGTTGTAAACAGGATGTACAtgcctgggcaaaaaaaaagggcccaaaatggcaaaatattaagcttttaatggtcttaaaaacaaatcattggtcaggaaattagcaagaattaaacaaatactgtagatttCTCCCTGCTGTATCAATCCTGGTTCCATTTATGAGCTTGTGATCAGgtccttgatgggctgcatcagatgtggcagataaccaaatatcccagaagatatttttggaaaattttgtacacccagacgtgttagtttgaattttgcatcaaacattataatcattataatgattAAAGACAAATGCTGGATGTAGGGCTGTGACAATACACCAGTATACTGCAATGATATGATTATGTCAATTCATGTTACATTATACAGTTTAAAGTGCTGCACATCCCATGAAATATAGcatacattttaaagaacaaacataCCAGCTGATTGAAGCTTAAATGTACAACATAGACTCTTTATAGATATTCCCACAAACAGAGCAGCTCCATGAAGTCACATCGACATAGTCTGATTTTCTTCCCAGTTAGGCTTAATCAGTATCTTGAAAGCAAATGTCACGTTTTGGTGTCCGATAAAATGGCTGTGCGTGCTGCATTCTTTATAGCACTAAAGATAGCTGGAGcatgtttttttcacagtgTCACTCAGTGCCCTAGTGCATGCTGTTGTTACACTGTAGTAGAATTAGCTTCTTCATAATTTTATTAAGAAGTAAATGAACAGTAAATTATCAGGCTACCTTTAAATTGTTAATGAAATGACTCTTGCACTACATTAGGTAAATAGGTGAAGATAATAGTATGTACAAGACAAATATATTACTCTATTTGTGTATAAATGGGTAAGCATTCTTTAAGAACAAGTCATTTATTAGGGAATAGATTTATTAAGGACTAGGTTTTAATTCTTCAGCTGAACTTCCTTAAAGGTTACTCAGTCAGTAAAGCTGTGACACATCAAGACGACTGTCACCTGTAGTTTTTGCATTGTGTCGTGTGCTGTTTGGCTGATTGAGCATGTTGAATTGCTGTCAGAGGCCAGTGTTTACTGAGTGGTTGTTCAGCCGAGCGAAACAGTGCAGGAGAAGACATATGGAGTGAGCAAAgcaaagaaataacacactcaAAAGGGCATACACAGAGTATCTAACTCTTCACCTCTtcctaatcttttttttttttttgaaaatggtcGAGAATAGCATTTAAATTTCAAGCTGCTTGTGTAAATTCACCTTGATGTAAACTAATTTGTTTATCTACATCTCAAGTACTAGTAAGgactacacacaggtgatgAATTAAAGAGAAAACCTGATTAACTGAGCATAGAAACATAATGAATGACTGAACTTCTGCATGATACAATTAGGCAATTAAGATTCTACCATGTATGTAGATGTATATAAATGCTGAGTAGTCCTAATTAACCTTGATTTTGGACCAATATGGCAAAAAGAAAAGATCTAAGGGAAGAGATCTTTAAAAGAAGTTTCATTATTGGGGCTGGATGGCAGGAGCTCCAGTCAAAAAGATGGCTCTGCTGGCTGTGTTTCAATAGGAAAATGAAATACATTCCTACATTAACATCTATGGAAAAGACATCTGGGTTGAAAGAAAACATTCACTGACCGTGATGCTCATATATTAGAGCGATATGTAAGGATATGTAAGAGCCACTGCTCTTGAGGGAACTGAGAATGTCAATGCAGGACATGATGCTTTAATCTGTATGTGTCATTGCCTTAAGGTTGTGAcaggaaggttgtgagtttacaTCCCCAGACTGTCGGAGTATCAATTGTAAGTCagtttggataaaagcatctgtcaAGTAAATGAATGTCGTATTAGCTTTAGGGAAAAATCTGCAGTAGTGACTGAACTGGTTAGATATCATTTCATTATTCTGAAATTGCTAccccattttaattttttttatttagttctttcTGCCATAAAATGGATTGTATATTACTGTGctgtatattactgtatatatttgcaATGGAAATGGGGCTATGGATGTTATTTTATCAAAATGATTTTGTCATGGTTGCTCTGACTTCGGCGCAGGACTACGGTTCTCATCAGCCACCGCACCTCACCGGATCATGGCACATGACTGTTTGCACCTGATTCAGGTTTTGGTTTAATGAGCACTTGTATTTAAATCTTGTCTTGCACAGCACACATTGTCTAGcgtttgtcttttgttgttgtttgttgtcatGTTGTGCGCTGTAGTCCATGTATGCCTTTTTGCCTTGAAATCATAGCTCATGTTTTGGTGTCTAAGTTTGCGGTGTCTGTATCattcagtttttattaaaatagaaatatgcACTTGCA

Function

symbol description
gls2b Predicted to enable glutaminase activity. Predicted to be involved in glutamate biosynthetic process and glutamine catabolic process. Predicted to act upstream of or within glutamine metabolic process. Is expressed in intestine and liver. Orthologous to human GLS2 (glutaminase 2).

NR:

description
PREDICTED: glutaminase kidney isoform, mitochondrial-like

GO:

id name namespace
GO:0006541 glutamine metabolic process biological_process
GO:0004359 glutaminase activity molecular_function

KEGG:

id description
K01425 glsA, GLS; glutaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932802.2 True 4544 mRNA 0.42 18 14114476 14132007

Neighbor

gene id symbol gene type direction distance location
rdh5 rdh5,LOC107573570,LOC107586996,LOC107653177,LOC107745400 coding upstream 1966 14102055 ~ 14112510 (+)
bloc1s1 bloc1s1 coding upstream 18457 14091935 ~ 14096019 (+)
rbck1 rbck1 coding upstream 34341 14065621 ~ 14080135 (+)
stab1 stab1 coding upstream 174654 13852220 ~ 13939822 (+)
nisch nisch,LOC107593071 coding upstream 267844 13816855 ~ 13846632 (+)
smarcd1 smarcd1,LOC107694342 coding downstream 363256 14495263 ~ 14513735 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 coding downstream 400703 14532710 ~ 14573427 (+)
LOC113537860 bcdin3d coding downstream 444327 14576334 ~ 14579348 (+)
LOC113538112 LOC108255148 coding downstream 467250 14599257 ~ 14610164 (+)
ccdc51 ccdc51 coding downstream 481756 14613763 ~ 14615894 (+)
G307281 NA non-coding upstream 17690 14096270 ~ 14096786 (+)
G307293 rpp14,LOC103374991 non-coding upstream 56274 14051835 ~ 14058202 (+)
G307262 pdhb,LOC107721006 non-coding upstream 98082 14015162 ~ 14016394 (+)
G307272 NA non-coding upstream 110645 14003608 ~ 14003831 (+)
LOC117599900 NA non-coding upstream 154286 13940426 ~ 13960190 (+)
G307588 NA non-coding downstream 16134 14148141 ~ 14148445 (+)
LOC117599878 NA non-coding downstream 451560 14583567 ~ 14590821 (+)
G307971 NA non-coding downstream 457018 14589025 ~ 14589232 (+)
G307976 NA non-coding downstream 466386 14598393 ~ 14598612 (+)
G307997 NA non-coding downstream 567990 14699997 ~ 14780758 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 421564 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 1651940 12457601 ~ 12462536 (+)
G306103 NA other upstream 2598663 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 2633376 11480669 ~ 11481100 (+)
G305869 NA other upstream 2788116 11325604 ~ 11326360 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 47776 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 382585 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 1624883 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 2357354 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 3128972 17260979 ~ 17263663 (+)

Expression


Co-expression Network