G307588


Basic Information

Item Value
gene id G307588
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14148141 ~ 14148445 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU364494
ttaattcaattcaattcaattcatttttatttgtatagcgctttttacaaaggtcattgtctcaaagcagctttacacaaacaaaagtaaagtgaagtgtgtgtgtgtgccgtctctgatgagcaagcagggcgacggtggcaaggaaaaactccctgagatggtgataggaagaaaccttgagaggaaccaggctcaacagagaacccatcctcatatgggtttacactgtagtgtgcgtgtgtgtgagcacaatgtgtgttggtgtagtccatggaaaacagctgaagcgttttcgtggcagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU364494 True 305 lncRNA 0.43 1 14148141 14148445

Neighbor

gene id symbol gene type direction distance location
gls2b gls2b,LOC108255189,LOC108431573 coding upstream 16134 14114476 ~ 14132007 (+)
rdh5 rdh5,LOC107573570,LOC107586996,LOC107653177,LOC107745400 coding upstream 35631 14102055 ~ 14112510 (+)
bloc1s1 bloc1s1 coding upstream 52122 14091935 ~ 14096019 (+)
rbck1 rbck1 coding upstream 68006 14065621 ~ 14080135 (+)
stab1 stab1 coding upstream 208319 13852220 ~ 13939822 (+)
smarcd1 smarcd1,LOC107694342 coding downstream 346818 14495263 ~ 14513735 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 coding downstream 384265 14532710 ~ 14573427 (+)
LOC113537860 bcdin3d coding downstream 427889 14576334 ~ 14579348 (+)
LOC113538112 LOC108255148 coding downstream 450812 14599257 ~ 14610164 (+)
ccdc51 ccdc51 coding downstream 465318 14613763 ~ 14615894 (+)
G307281 NA non-coding upstream 51355 14096270 ~ 14096786 (+)
G307293 rpp14,LOC103374991 non-coding upstream 89939 14051835 ~ 14058202 (+)
G307262 pdhb,LOC107721006 non-coding upstream 131747 14015162 ~ 14016394 (+)
G307272 NA non-coding upstream 144310 14003608 ~ 14003831 (+)
LOC117599900 NA non-coding upstream 187951 13940426 ~ 13960190 (+)
LOC117599878 NA non-coding downstream 435122 14583567 ~ 14590821 (+)
G307971 NA non-coding downstream 440580 14589025 ~ 14589232 (+)
G307976 NA non-coding downstream 449948 14598393 ~ 14598612 (+)
G307997 NA non-coding downstream 551552 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding downstream 612386 14760831 ~ 14763174 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 455229 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 1685605 12457601 ~ 12462536 (+)
G306103 NA other upstream 2632328 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 2667041 11480669 ~ 11481100 (+)
G305869 NA other upstream 2821781 11325604 ~ 11326360 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 31338 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 366147 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 1608445 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 2340916 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 3112534 17260979 ~ 17263663 (+)

Expression


Co-expression Network