G318331


Basic Information

Item Value
gene id G318331
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11106795 ~ 11169139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU377003
AGTTGAAAttcattttggtttttatttatttttttttcattcataacAGCAAGAGagtcaaataaaacaataataaatgtgcataaaacatttttaaaacatagtaCAAGATCTTAGCAACTGTAAGCAAAGAGTGGGCGTGAGATTACATGGTGAGTGTGAAGCGTTTATTAAAGCAGGTGCTTTCAGCAGGTAGGGACCACCGGCGGTTTCACTGTGGCAGACGCAGGGCAGAGCTGTGCCTTGTGTCTGTTCGGAGGAAAGTGATGCTTTGGTTTATTAGCACTTGTGCAGCAGCGGTAAGTGAGTCAAAACCTCAAACGGAGATCAGAAGTTTTACATTCATTGTGTTTCCTTTGTTTTGGTGGGTGACCTTTTCCTGCTGAAGGCACGGTTGCctcgttacacacacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377003 True 454 lncRNA 0.42 2 11106795 11169139

Neighbor

gene id symbol gene type direction distance location
map6d1 LOC108280841 coding upstream 209044 10880241 ~ 10897751 (+)
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding upstream 228139 10861959 ~ 10878656 (+)
ncapd2 ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881 coding upstream 246499 10838755 ~ 10860296 (+)
mul1a LOC108280869 coding upstream 387646 10711708 ~ 10719149 (+)
vwa5b2 LOC108280745 coding upstream 402303 10655409 ~ 10704492 (+)
LOC113533503 cul3,LOC108261246,LOC104924156,LOC100710156,LOC107099750,LOC108240497 coding downstream 18659 11187798 ~ 11221863 (+)
ap1s3b ap1s3b,LOC108280899,LOC108428267,LOC107738797,LOC107660160,LOC107679405,LOC107552497,LOC107567705 coding downstream 69100 11238239 ~ 11253682 (+)
LOC113533219 LOC108280465,LOC108280463,LOC108280461 coding downstream 138882 11308021 ~ 11315878 (+)
LOC113533220 LOC108280463,LOC108280465,LOC108280461,LOC108428334 coding downstream 154988 11324127 ~ 11342139 (+)
LOC117599968 LOC108280463,LOC108280461,LOC108280465 coding downstream 188431 11357570 ~ 11374709 (+)
G318273 NA non-coding upstream 97649 11007948 ~ 11009146 (+)
G318248 klhl24 non-coding upstream 119219 10959921 ~ 10987576 (+)
LOC117595750 NA non-coding upstream 195189 10841640 ~ 10911606 (+)
LOC113533661 NA non-coding upstream 259009 10847468 ~ 10847786 (+)
LOC113533665 NA non-coding upstream 260783 10845716 ~ 10846012 (+)
G318426 NA non-coding downstream 234125 11403264 ~ 11404056 (+)
G318647 NA non-coding downstream 604804 11773943 ~ 11774148 (+)
G318658 NA non-coding downstream 629819 11798958 ~ 11799181 (+)
LOC117599957 NA non-coding downstream 664169 11833308 ~ 11846411 (+)
G318683 NA non-coding downstream 701628 11870767 ~ 11870966 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 372707 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 537888 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 543801 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 1128879 9958993 ~ 9977916 (+)
G317390 NA other upstream 1691631 9412323 ~ 9415164 (+)
per2 LOC108280459,LOC108439864 other downstream 230745 11399884 ~ 11464769 (+)
G318439 NA other downstream 298160 11467299 ~ 11469499 (+)
G319170 NA other downstream 1595916 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 1852003 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2668294 13837433 ~ 13897914 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location