G318647


Basic Information

Item Value
gene id G318647
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11773943 ~ 11774148 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU377440
aaaaattacattttatgatgGTTTAAAGCActgtaaaatttttaaaaattgcccagtaaatattttattcaactAAAAATGTTGGTGAAACTGAATCAGATACGGATCCTTTACATTCTAGAACTTTAACTGTGAGATTTGACCCTAGTTTGAAAGAGCTCCATGTTTCTGAGTCATTTGTTTTATGTGTAGCAACTAACTTCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377440 True 206 lncRNA 0.30 1 11773943 11774148

Neighbor

gene id symbol gene type direction distance location
pax3a pax3a,LOC108280216,LOC108439877 coding upstream 151098 11596699 ~ 11622845 (+)
trnag-ccc_6 NA coding upstream 201046 11572827 ~ 11572897 (+)
trnai-aau_17 NA coding upstream 224755 11549115 ~ 11549188 (+)
trnap-agg_14 NA coding upstream 225764 11548108 ~ 11548179 (+)
snorc c20h2orf82 coding upstream 229218 11535133 ~ 11544725 (+)
LOC113533522 NA coding downstream 642362 12416510 ~ 12428531 (+)
LOC113533470 NA coding downstream 1008389 12782537 ~ 12796824 (+)
LOC113533117 LOC108280188,LOC108433071 coding downstream 1194166 12968314 ~ 12982849 (+)
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding downstream 1230646 13004794 ~ 13014554 (+)
rorcb rorcb,LOC108280913,LOC108433101,LOC107757806,LOC107698501 coding downstream 1411783 13185931 ~ 13216057 (+)
G318426 NA non-coding upstream 369887 11403264 ~ 11404056 (+)
G318331 NA non-coding upstream 604804 11106795 ~ 11169139 (+)
G318332 mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615 non-coding upstream 654116 11112953 ~ 11119827 (+)
G318273 NA non-coding upstream 764797 11007948 ~ 11009146 (+)
G318248 klhl24 non-coding upstream 786367 10959921 ~ 10987576 (+)
G318658 NA non-coding downstream 24810 11798958 ~ 11799181 (+)
LOC117599957 NA non-coding downstream 59160 11833308 ~ 11846411 (+)
G318683 NA non-coding downstream 96619 11870767 ~ 11870966 (+)
G318697 NA non-coding downstream 251060 12025208 ~ 12025443 (+)
G318725 NA non-coding downstream 289736 12063884 ~ 12072187 (+)
G318439 NA other upstream 304444 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 309174 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 1039855 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 1205036 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 1210949 10536431 ~ 10562994 (+)
G319170 NA other downstream 990907 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 1246994 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2063285 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 2306101 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 2612090 14386238 ~ 14466753 (+)

Expression


Co-expression Network