G318725


Basic Information

Item Value
gene id G318725
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12063884 ~ 12072187 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU377521
TGGACTACCAAGATCTTTATTGAGTGTGTTTTTAGTACAATATTTCTCAGAAAGTTACAGTTACAAACTCTGACATACTCATCACAATAAACAGGTTTTAACTATACAGAGACACAAAGCAGGAAATGAAGGGCATTTCCTTTAaatctatatatacataaacgTGGGAACGAGTGTCCATGCCATGCTTCTAGtgtccatcctctctctctctctctctctctctctctctctatgtctctttctctcacacactgtgtgtgtgtgtctctttcactctctccctTACAGTATATGTGTACAAGGACACTGTCTGGGTTCCAGACAGTCGTTTTAATCCCATGCACtcatacacctacacacacatagccTTACAGCCAGACACTAAATCTATTCTCCCGCATTTGCCCGCATGTGTGAGCCGTGCAGGGAAACATACAGACGTGACATGCCTTGCTCTGCTGTTGGCAtgctaaaaaagaagcactGGTATAATTCTGCCAAAATTGCACAGAAGTGAGTGTTTGTATGTCTACACTCCAAGCAAAGAGTGataaaattagaataaaagCAGCAAATCCCAGTGTAACACACATCCACATTGTCTTGGACATGAATCCATTGTCAGGACATGAGGCTAAATCTCCTCGAGGTGAAACTCAGCATTGCCagcttttttctttgtgtgtgtgtgtttttttttttttggtagaatAAGGAGAAACGGATTGGAGCAAGATATGAAAAGAACAgggaaacacacactttcatgtcCATGGATTGTAGAGAAAGAGCTAAAGGGACATTCTGgcaaaaattaaaatcatctcTCTTATAGTGTTTAGCTTTCGCCACTCCATACATATTTACTAGAAATGAAATCTTCAAATGAATCTTGCCTTTTGTGCTACATTCTGCTAGAGTTTCCATAAACTATATAATGCATTTCAGTAATGCATGCTAGGTAGTGTAGAGAAAGAACAATAATAGCAATAAATACAATGTGGCAGCAATAGAAAACCCACTGATGTACTACTCTGCTATTCTTGCTATCTAGAAAATTAGAGTATTAAATAATAGGAACAAATATGTTAAACACCAGTTTTATGCCAGAATGCCCCTTTACGTTTACACATctgatcattattattgtattacacAGTTAATACTAATATCAGAACACCAGTGATTGCTTTGCAGATTACCACAAGATACAGTGACCTGGTTTAAATTGTTTGTGGCTCCTTCATGATTTATATGAAGGTTTATATTGTAAAAAATCTTTTATAGACTCAATCAAATATTCAACATTTGATGTAGATAATGTATTGTATGCGACATAATTAAGAACATATCAGACTagcttgtgtttttattgaaCCCTTTCTTTATTGGTACATCGATCCACTCGTCTACTGCATCCATCCAACGACGGACCATCTATACAACCATTTGTTCATCCTTCCATCTAAACACCCAACCATCCATCAACACATCCATCCAGCCAGCCATCCATCCAAGTCGTCCATCCATCTACCCAATCTACCAAccatcctttcttcctttcacccatccatccattcatctatccaaCCATCAATGtgttcatctatccatccatccatccagctaGCCAGCCAGCCAGCGAGTAATctagactttaaaaaaaatggtaaattTACCCATCCATTTGCCCATCTATacattctttcttcctttcactcatccacccatccacccacccatccatccatctatccatacatccatctatccatccatccatccatccatccatctatccatacatccatctatccatctatccatccatccatccatttgtccaTCCATCAATTTGTCCATCCATCAATTTGTCCATCCATTCACCCTACACTATATAGTAAaatgtttgtagacacctgaccatcacacccatgtgcattttttgaacatcccattccagatttagttcccattttgttgttataataacttccactcttctgggaaagagTTATaatccactcttctgggaaggcttccaATAGATTTTAGTGTGTGGCTCTGAAGAATGGCCCATTCATctcaaaagcattagtgaggttgggtgCTGAGGTCAGGCAAGAAGGCGTGGGGTGTAGTCAGCCTTCtaatttatcccaaaggtgttcagtggggttgaggtcagggctctgcccaggtcacttgagttcttcccTGGAAACCTTTGCCAATttgtccattcatccatctgtctgtccatccgtccatccatctatcGGTCCATCCaaccgtccatccatccatccatgcgtccatccatccatccagccatctttctctcactttcccaTAGCAGCCTATTACAAGTCCCTGACCATCAGAAGTACAACAATGGCATTCCTGCCCTGTTTTTCAGCACTAGAActgaaagaggaagaagaagaagaaaaggtgaTCTCTAAATACACATCCATTGATTGCTAACACACTGGTCTGTGAAAGCCCTCTCTGTGTTTTCATAACCCTAACCACTGCTAATATTGTTCACAGGAGAAGAGAATGGAGCAAGGCCTAAAATAAGGGCAGAGtcagagggaggaagagagagagacagagagagagaccattTGCTTTCAGCAAACATACTCTCACCCTGAATCTTTTGCTCATTAACTTCTAAACTAGAATAATGCTTCCTTCTTCATCTCAGGCCAGCATCCCCATCCCATCTTCCCCATCCCCATTAAGAGTATGCAAGGTCGTGCTACTTTCACCGTGGCAACCAAAGAAGCGAGAGCAGGACATAGCCCAaagcctgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgatctcaaTTATCACTTCAGGAGAATGTGTTCATTGATAGGGCACCAGGCATCTGTTAGCAAAGGTTCGTGCAGATGTACAGCCTAGCCACAGATGACCAGTCACTCTTTGCACCAGACTGATGTCAGGGACCTTGTGCACTAGGTTCAACAATGTTATCAGAACACATATGGTGCTTCATGCCCCACACATTaaacgtgtgtttgtgtgtgtatatgtgtgtgtgagagagagagactcatgcTGATCATCCTAGCACTAGCTGACTATATGCTCATCAGTTCATTGAACATGTAAACACTTGATTAGCGAATTTTGAAGACCCTGTTTTGAAGACGAACAGCAGTACAGCATATTTAACAGTGCAATAACACTAACATGGACGTACCAGAGAGTTTAggtagcaaacacacacacacacacacacacacacacagagctgtccTTAGACAGCTCCACCATACACTCCAACACAAACGAACAAGAGAAACCCAGAGAGGATcataaagaaaggaagaaaaagaacatgaacagaagaagaagaagaagaagaagaagaaggagaaaaactGTACAGTTAAGTGTTCATCAGCATGGAAACTTCTACAATATACATCGTCCAGTTTGGTAGCCTGAAGGTTTCATTTGCTTTACCCTACAAGTTGTTTATACACAATTAAATCACATTTCTACAGTGTTTTGCTCCGCGACAGCCACAAATCTTTGAAGATTGTCCTTTTGggcttcatttcatttccccAGCTTGACTACATTAAATTCCTTTTCTTTGGAGTCTACCATGAGTCCAGTATTATCCACGCAATGCACACTGTGCCCAAAACCCAAGCAGGAGAAAAGTATGCACATATGTATCTTTTACAAAGCACCTTCAATATGAAGGTTTACTCCAGagatatattcatatttatttaaagatataCACGCAGGCCGTTCAAGACGTCCTTTGGCAAAGCCGGCTGTCAGGTAGTGATGCTGGGAAGCAGAGGACTACGAGGTATAGCTGTATTTCGTTtcaatagaaaagaaaataaatatataacagcaACCAAAAAAAGAAGTGCATcaggaggtgttttttttttcttggtagTAGATCCTCAGTTGCGCTCACAGTTTAAAATagttaagaaaaagaaaagaatcagCATGATGAACCATGAGCAAActgaaagtgaagaaaaaatagTAGATATGTCCTTGGTATTAGAAATGGATTGACCgtttttgctttattaatgGCCAGATGGATATCCTGTATGTACAGccagagacagatagatggacagacagacagggattCCTGTTTTGTTTACTCTTTACAGACACACTGATCTGGAGTGTGTTTCAGCACATGCGCGTCTTTTTATCAGATCAGAATGACCGTCTCAACCCTGGCGCGCTCCGACGTGCCAGTGCTCACCCGCTCCTGCACGCTGAGCAGGATGCCTGGCCCGTCGACTGGCGCCTGCTGTAGTCATGCCAGTGCTGTGGGAGACTGGCACTGGCTCATCTGCATGGTCTGCACATTGCTCAGGATCTTCTTCTGGTGGCCGGCCAGAGTCACGCCTATCCTCAGCAAGTCTCTCTGAAGTAATCTGGGCGACAAGTTGCAGGGAAGTGAAGCCAGAGTTGAGAAAATTGTCTCTATACTGAGACATCTTAATAGCAGACAGCCAGTCCTCCACTGAGCTGAAGGTGTTGAAGTCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377521 True 4585 lncRNA 0.42 2 12063884 12072187

Neighbor

gene id symbol gene type direction distance location
pax3a pax3a,LOC108280216,LOC108439877 coding upstream 441039 11596699 ~ 11622845 (+)
trnag-ccc_6 NA coding upstream 490987 11572827 ~ 11572897 (+)
trnai-aau_17 NA coding upstream 514696 11549115 ~ 11549188 (+)
trnap-agg_14 NA coding upstream 515705 11548108 ~ 11548179 (+)
snorc c20h2orf82 coding upstream 519159 11535133 ~ 11544725 (+)
LOC113533522 NA coding downstream 344323 12416510 ~ 12428531 (+)
LOC113533470 NA coding downstream 710350 12782537 ~ 12796824 (+)
LOC113533117 LOC108280188,LOC108433071 coding downstream 896127 12968314 ~ 12982849 (+)
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding downstream 932607 13004794 ~ 13014554 (+)
rorcb rorcb,LOC108280913,LOC108433101,LOC107757806,LOC107698501 coding downstream 1113744 13185931 ~ 13216057 (+)
G318697 NA non-coding upstream 38441 12025208 ~ 12025443 (+)
G318683 NA non-coding upstream 192918 11870767 ~ 11870966 (+)
LOC117599957 NA non-coding upstream 217473 11833308 ~ 11846411 (+)
G318658 NA non-coding upstream 264703 11798958 ~ 11799181 (+)
G318647 NA non-coding upstream 289736 11773943 ~ 11774148 (+)
LOC117599989 NA non-coding downstream 487326 12559513 ~ 12572407 (+)
LOC117599992 NA non-coding downstream 550112 12622299 ~ 12625754 (+)
G319087 NA non-coding downstream 555488 12627675 ~ 12627890 (+)
LOC117599962 NA non-coding downstream 689649 12761836 ~ 12763727 (+)
G319198 NA non-coding downstream 733335 12805522 ~ 12805732 (+)
G318439 NA other upstream 594385 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 599115 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 1329796 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 1494977 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 1500890 10536431 ~ 10562994 (+)
G319170 NA other downstream 692868 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 948955 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 1765246 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 2008062 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 2314051 14386238 ~ 14466753 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G57596 NA non-coding CM030126.1 CM030126.1 40721431 ~ 40777084 (-)
mexican tetra (Astyanax mexicanus) G296330 NA non-coding NW_019172827.1 APWO02000045.1 736546 ~ 769416 (+)